The combination of mkdir -p and mv seem to be close, the only issue is that coverage and validation are treated as separate directories outside of BAM, rather then inside of it.
Code:
mkdir -p "/media/cmccabe/My Book Western Digital/6-10-2016" | mv -v /home/cmccabe/Desktop/NGS/API/6-10-2016/{bam/{validation,coverage},bedtools} "/media/cmccabe/My Book Western Digital/6-10-2016"
Using rsync is close as well except it does not transer the BAM folder and treats coverage and validation as separate directories outside of BAM, rather then inside of it.
Code:
6-10-2016
coverage
validation
bedtools
Code:
mkdir -p "/media/cmccabe/My Book Western Digital/6-10-2016" | rsync -av /home/cmccabe/Desktop/NGS/API/6-10-2016/{bam/{validation,coverage},bedtools} "/media/cmccabe/My Book Western Digital/6-10-2016"
Thank you .
Last edited by cmccabe; 08-23-2016 at 01:17 PM..
Reason: added details, updated rsync
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08-23-2016
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