07-30-2007
dear shell_life
this is not wht i want
having second file which is like
say >gi|114577921|ref|XP_00113.....
>gi|114583129|ref|XP_516070.2| PREDICTED: ATP-bind....
so using tht file to search for first file as shown in the first original post
so output shud be like that
>gi|114577921|ref|XP_001136060.1| PREDICTED: hypothetical protein [Pan troglodytes]
MQSISGPVFTPALSLEEAPGGDAESRCAPSAGSLLHQDVGLEWPLTHLEISLH
>gi|114583129|ref|XP_516070.2| PREDICTED: ATP-binding cassette, sub-family A, member 12 isoform 4 [Pan troglodytes]
MASLFHQLQILVWKNWLGVKRQPLWTLVLILWPVIIFIILAITRTKFPPTAKPTCYLAPRNLPSTGFFPFLQTLLCDTDS
KCKDTPYGPQDLLRRKGIDDALFKDSEILRKSSNLDKDSSLSFQSTQVPERRHASLATVFPSPSSDLEIPGTYTFNGSQV
LARILGLEKLLKQNSTSEDIRRELCDSYPGYIVDDAFSWTFLGRNVFNKFCLSNKTLLESSLQELNKQFSQLSSDPNNQK
IVFQEIVRMLSFFSQVQEQKAVWQLLSSFPNVFQNDTSLSNLFDVLRKANSVLLVVQKVYPHFATNEGFRTLQKSVKHLL
thanks
cdfd123
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi All,
I know awk command can do it, but can we use tr command to print 5th column of out put 'ls -l' command????
Regards,
Nidhi... (4 Replies)
Discussion started by: Nidhi2177
4 Replies
2. Shell Programming and Scripting
Suppose u have a file like
1 30
ABCSAAHSNJQJALBALMKAANKAMLAMALK
4562676268836826826868268468368282972982
2863923792102370179372012792701739729291
31 60... (8 Replies)
Discussion started by: cdfd123
8 Replies
3. Shell Programming and Scripting
how can i print the output of the shell script in bigger size
eg: echo " hello world"
i want to print this in the output with bigger size in the middle of the screen.
can someone please help me out in that (2 Replies)
Discussion started by: mail2sant
2 Replies
4. Shell Programming and Scripting
half of the problem is already solved with the help of bartus11 suggestion
I have a txt file having rows and coulmns, i want to perform some operation on a specific coulmn starting from a specific line.
50.000000 1 1 1
1000.00000
1000.00000
... (5 Replies)
Discussion started by: shashi792
5 Replies
5. Shell Programming and Scripting
i have written a simple script to print the out of a command and send an mail but i am not getting a shell output here .please see my script
present output is like this i need an output as same as shell
Postfix log summaries for Jan 24 Grand Totals ------------ messages 1432 received 1439... (2 Replies)
Discussion started by: unimaxlin
2 Replies
6. AIX
HI All,
I am using grep command to serach a pattern in a list of files and storing the output in a variable. Then i am applying some logic on that variable to get the required output.
But Thing is that when the pattern is present mutiple times in a file, i am getting the output of grep in a... (3 Replies)
Discussion started by: goutam sahoo
3 Replies
7. UNIX for Dummies Questions & Answers
I have this output from a loop
a11
1,2
3,4
5,6
7,8
12,8
5,4
3,6
a12
10,11
12,13
15,18
20,22
a13
... (3 Replies)
Discussion started by: maryre89
3 Replies
8. Shell Programming and Scripting
HI,
I want to connect to database and fetch the count from a table.
The sql query is as below :
select count(*) from table_test where test_column='read';
How can I print the output of this statement using shell script.
Thanks in advance. (4 Replies)
Discussion started by: confused_info
4 Replies
9. Shell Programming and Scripting
#! /bin/ksh
#] && . ./.profile 2>/dev/null
if test -f '.profile'; then . ./.profile; fi;
#. .profile
LOG_DIR=/app/rpx/jobs/scripts/just/logs
sendEmail()
{
pzCType="$1"; pzTitle="$2"; pzMsg="$3"; pzFrom="$4"; pzTo="$5"; pzFiles="$6"; pzReplyTo="$7"
(
... (4 Replies)
Discussion started by: ankit.mca.aaidu
4 Replies
10. Shell Programming and Scripting
Hi Team,
Need shell script to Telnet multiple node , Ping some IP and print output like pass or fail.
Need this script to check reachability of multiple nodes at same time.
Help me.
I use this but not working...
Eg.
in this script i need to telnet... (4 Replies)
Discussion started by: Ganesh Mankar
4 Replies
SHAR(1) BSD General Commands Manual SHAR(1)
NAME
shar -- create a shell archive of files
SYNOPSIS
shar file ...
DESCRIPTION
shar writes an sh(1) shell script to the standard output which will recreate the file hierarchy specified by the command line operands.
Directories will be recreated and must be specified before the files they contain (the find(1) utility does this correctly).
shar is normally used for distributing files by ftp(1) or mail(1).
EXAMPLES
To create a shell archive of the program ls(1) and mail it to Rick:
cd ls
shar `find . -print` | mail -s "ls source" rick
To recreate the program directory:
mkdir ls
cd ls
...
<delete header lines and examine mailed archive>
...
sh archive
SEE ALSO
compress(1), mail(1), tar(1), uuencode(1)
HISTORY
The shar command appeared in 4.4BSD.
BUGS
shar makes no provisions for special types of files or files containing magic characters.
SECURITY CONSIDERATIONS
It is easy to insert trojan horses into shar files. It is strongly recommended that all shell archive files be examined before running them
through sh(1). Archives produced using this implementation of shar may be easily examined with the command:
egrep -v '^[X#]' shar.file
BSD
June 6, 1993 BSD