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Top Forums Shell Programming and Scripting Help with print if two columns is somehow similiar Post 302964678 by perl_beginner on Monday 18th of January 2016 05:33:56 AM
Old 01-18-2016
Help with print if two columns is somehow similiar

Input File:
Code:
GO:0009437,GO:0006355,GO:0006351  GO:0009437
GO:0006777,GO:0032324  GO:0035433,GO:0015992,GO:0071422
GO:0009082,GO:0009097,GO:0006566  GO:0009082,GO:0006351
GO:0000160,GO:0045893,GO:0006351  GO:0006071,GO:0045892,GO:0006351
GO:0009244  GO:0009244
GO:0046417,GO:0009094,GO:0006571  GO:0046417,GO:0009094,GO:0006571
.
.

Desired output File:
Code:
GO:0009437,GO:0006355,GO:0006351  GO:0009437
GO:0009082,GO:0009097,GO:0006566  GO:0009082,GO:0006351
GO:0000160,GO:0045893,GO:0006351  GO:0006071,GO:0045892,GO:0006351
GO:0009244  GO:0009244
GO:0046417,GO:0009094,GO:0006571  GO:0046417,GO:0009094,GO:0006571
.
.

Command I try:
Code:
awk '$1~$2{print}' Input_File
GO:0009437,GO:0006355,GO:0006351  GO:0009437
GO:0009244  GO:0009244
GO:0046417,GO:0009094,GO:0006571  GO:0046417,GO:0009094,GO:0006571

I plan to print out whatever is "somehow similar" between Column 1 and Column 2.
"," is a separator to separate the elements between all record in Column 1 and Column 2.

Thanks for any advice.

Last edited by perl_beginner; 01-19-2016 at 04:59 AM..
 

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comm(1) 						      General Commands Manual							   comm(1)

NAME
comm - select or reject lines common to two sorted files SYNOPSIS
file1 file2 DESCRIPTION
comm reads file1 and file2, which should be ordered in increasing collating sequence (see sort(1) and Environment Variables below), and produces a three-column output: Column 1: Lines that appear only in file1, Column 2: Lines that appear only in file2, Column 3: Lines that appear in both files. If is used for file1 or file2, the standard input is used. Options 1, 2, or 3 suppress printing of the corresponding column. Thus prints only the lines common to the two files; prints only lines in the first file but not in the second; does nothing useful. EXTERNAL INFLUENCES
Environment Variables determines the collating sequence expects from the input files. determines the language in which messages are displayed. If is not specified in the environment or is set to the empty string, the value of determines the language in which messages are displayed. If is not specified in the environment or is set to the empty string, the value of is used as a default. If is not specified or is set to the empty string, a default of ``C'' (see lang(5)) is used instead of If any internationalization variable contains an invalid setting, behaves as if all internationalization variables are set to ``C''. See environ(5). International Code Set Support Single- and multi-byte character code sets are supported. EXAMPLES
The following examples assume that and have been ordered in the collating sequence defined by the or environment variable. Print all lines common to and (in other words, print column 3): Print all lines that appear in but not in (in other words, print column 1): Print all lines that appear in but not in (in other words, print column 2): SEE ALSO
cmp(1), diff(1), sdiff(1), sort(1), uniq(1). STANDARDS CONFORMANCE
comm(1)
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