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Operating Systems Linux Comparing specific columns between two files Post 302956312 by Syeda Sumayya on Tuesday 29th of September 2015 01:38:42 AM
Old 09-29-2015
Comparing specific columns between two files

Dear All,

I have two files. File-A having 5 columns and File-B having 2 columns.
I want to match 4th column of file-A with both columns of file-B and print all contents of file-A + the matching lines of file-B as output.

file-A
Code:
30.00   12      gi|49483390|ref|YP_040614.1|    DIP-29721N|refseq:NP_683750|uniprot:Q8R418      2e-08
30.00   13      gi|49484704|ref|YP_041928.1|    DIP-33449N|uniprot:Q8WZ42       3e-09
30.00   16      gi|49483425|ref|YP_040649.1|    DIP-23879N|refseq:NP_650366|uniprot:Q9VFJ3      4e-06
30.00   17      gi|49484107|ref|YP_041331.1|    DIP-46805N|uniprot:P70388       1e-06
30.00   21      gi|49482259|ref|YP_039483.1|    DIP-25107N|refseq:NP_495440     2e-15
30.00   22      gi|49482976|ref|YP_040200.1|    DIP-22713N|refseq:NP_524108     1e-06
30.00   26      gi|49483184|ref|YP_040408.1|    DIP-17056N|refseq:NP_651605     1e-09
30.00   31      gi|49484099|ref|YP_041323.1|    DIP-29200N|refseq:NP_005436|uniprot:Q9UQE7      6e-12

flle-B
Code:
DIP-10000N|refseq:NP_417192|uniprotkb:P30131    DIP-31848N|uniprotkb:P0A9B2
DIP-10000N|refseq:NP_417192|uniprotkb:P30131    DIP-36429N|uniprotkb:P0AAM7
DIP-10001N|refseq:NP_418748|uniprotkb:P39377    DIP-10001N|refseq:NP_418748|uniprotkb:P39377
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-10003N|refseq:NP_290325|uniprotkb:P29209
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-10149N|refseq:NP_417877|uniprotkb:P06993
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-10397N|refseq:NP_416719|uniprotkb:P06996
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-10467N|refseq:NP_415423|uniprotkb:P09373
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-10557N|refseq:NP_416344|uniprotkb:P23865
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-10573N|refseq:NP_414736|uniprotkb:P16659
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-10783N|refseq:NP_417800|uniprotkb:P02359
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-11097N|refseq:NP_290066|uniprotkb:P28242
DIP-10003N|refseq:NP_290325|uniprotkb:P29209    DIP-11354N|refseq:NP_415140|uniprotkb:P39177

Is it possible? I'd be highly thankful if someone can help me.

Last edited by Syeda Sumayya; 09-29-2015 at 03:18 AM..
 

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DI(3)							     Library Functions Manual							     DI(3)

NAME
DI - verify assertions in C and C++ code using gdb(1) SYNOPSIS
#include <DI.h> DI(exprn) DIG(exprn,guard) DIH(exprn,handler) DIP(exprn,param) DIGH(exprn,guard,handler) DIHP(exprn,handler,param) DIGHP(exprn,guard,handler,param) DS(exprn) DESCRIPTION
The DI(exprn) checks that the exprn is true in the same way as assert(3). It is however implemented by generating debugger commands from the source code and so only works if you run the command under a debugger after source the command file generated by nana(1). exprn - the expression to be checked. guard - the expression is normally only checked if the guard is true. handler - a macro which generates the code that handles the error condition. param - a parameter which can be passed off to the handler. This can be used for identifying the assertion failure in a space-efficent man- ner, e.g. by copying it into a register before aborting. See nana.info for details on configuring the behaviour on error detection, etc. You also need to include the nana library by using -lnana if you use the default setup. In addition to the DI, DIG, etc DI.h also provides DN, DNG, etc which are used to check that an expression is never true. SEE ALSO
nana-clg(1), nana(1), nana(3), I(3), L(3), DL(3), Q(3) and nana.info. The nana.info file is the primary documentation for this library. AUTHOR
Phil Maker <pjm@gnu.org> DI(3)
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