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Full Discussion: Help in awk/bash
Top Forums Shell Programming and Scripting Help in awk/bash Post 302751403 by bioinfo on Friday 4th of January 2013 01:08:59 AM
Old 01-04-2013
Linux Help in awk/bash
Hi, I have two files: atom.txt and g.txt
atom.txt has multiple patterns but I am showing only two patterns each ending with ENDMDL:
Code:
ATOM 1 N SER A 1 35.092 83.194 140.076 1.00 0.00 N 
ATOM 2 CA SER A 1 35.216 83.725 138.725 1.00 0.00 C 
TER
ENDMDL
ATOM 1 N SER A 1 35.683 81.326 139.778 1.00 0.00 N 
ATOM 2 CA SER A 1 35.422 82.736 139.929 1.00 0.00 C 
TER
ENDMDL

g.txt
Code:
Group   Centre      Branches              Id_of_Branches
 10       051          30            003, 007, 051, 034, .................. (30 values)   
 72       183          26            100,................................    
394       600          23             ...................................    
391       641          20             .....................................

Corresponding to value of Id of Branches from g.txt, I wish to retreive that pattern from atom.txt.
Therefore, required 4 output files corresponding to 4 groups and 5th file for patterns corresponding to Id from Centre:
Code:
(1) G10.txt
#Id 003
ATOM 1 N SER A 1 35.092 83.194 140.076 1.00 0.00 N 
ATOM 2 CA SER A 1 35.216 83.725 138.725 1.00 0.00 C 
TER
ENDMDL
#Id 007
ATOM 1 N SER A 1 35.092 83.194 140.076 1.00 0.00 N 
ATOM 2 CA SER A 1 35.216 83.725 138.725 1.00 0.00 C 
TER
ENDMDL
.....................
.....................

(2)G72.txt
#Id 100
ATOM 1 N SER A 1 37.092 83.194 140.076 1.00 0.00 N 
ATOM 2 CA SER A 1 37.216 83.725 138.725 1.00 0.00 C 
TER
ENDMDL
.....................
.....................

(3)G394.txt
..................
(4)G391.txt
...................
(5) Centre.txt
#Id 051
ATOM 1 N SER A 1 35.092 83.194 140.076 1.00 0.00 N 
ATOM 2 CA SER A 1 35.216 83.725 138.725 1.00 0.00 C 
TER
ENDMDL
.....................
.....................
.....................

Thanks
Last edited by bioinfo; 01-04-2013 at 02:15 AM..
 

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LEARN ABOUT SUSE

xsetwmprotocols

XSetWMProtocols(3)						  XLIB FUNCTIONS						XSetWMProtocols(3)

NAME

       XSetWMProtocols, XGetWMProtocols - set or read a window's WM_PROTOCOLS property

SYNTAX

       Status XSetWMProtocols(Display *display, Window w, Atom *protocols, int count);

       Status XGetWMProtocols(Display *display, Window w, Atom **protocols_return, int *count_return);

ARGUMENTS

       display	 Specifies the connection to the X server.

       count	 Specifies the number of protocols in the list.

       count_return
		 Returns the number of protocols in the list.

       protocols Specifies the list of protocols.

       protocols_return
		 Returns the list of protocols.

DESCRIPTION

       The XSetWMProtocols function replaces the WM_PROTOCOLS property on the specified window with the list of atoms specified by the protocols
       argument.  If the property does not already exist, XSetWMProtocols sets the WM_PROTOCOLS property on the specified window to the list of
       atoms specified by the protocols argument.  The property is stored with a type of ATOM and a format of 32.  If it cannot intern the WM_PRO-
       TOCOLS atom, XSetWMProtocols returns a zero status.  Otherwise, it returns a nonzero status.

       XSetWMProtocols can generate BadAlloc and BadWindow errors.

       The XGetWMProtocols function returns the list of atoms stored in the WM_PROTOCOLS property on the specified window.  These atoms describe
       window manager protocols in which the owner of this window is willing to participate.  If the property exists, is of type ATOM, is of for-
       mat 32, and the atom WM_PROTOCOLS can be interned, XGetWMProtocols sets the protocols_return argument to a list of atoms, sets the
       count_return argument to the number of elements in the list, and returns a nonzero status.  Otherwise, it sets neither of the return argu-
       ments and returns a zero status.  To release the list of atoms, use XFree.

       XGetWMProtocols can generate a BadWindow error.

PROPERTIES

       WM_PROTOCOLS
		 List of atoms that identify the communications protocols between the client and window manager in which the client is willing to
		 participate.

DIAGNOSTICS

       BadAlloc  The server failed to allocate the requested resource or server memory.

       BadWindow A value for a Window argument does not name a defined Window.

SEE ALSO

       XAllocClassHint(3), XAllocIconSize(3), XAllocSizeHints(3), XAllocWMHints(3), XFree(3), XSetCommand(3), XSetTransientForHint(3), XSet-
       TextProperty(3), XSetWMClientMachine(3), XSetWMColormapWindows(3), XSetWMIconName(3), XSetWMName(3), XSetWMProperties(3), XStringListTo-
       TextProperty(3)
       Xlib - C Language X Interface

X Version 11							   libX11 1.3.2 						XSetWMProtocols(3)
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