hi,
i have got a table with n number of rows and 2 columns..how can i get get 1 row at a time using any unix command without copying to any file?
Thanks and Regards
vivek.s (13 Replies)
It sounds so easy to do.
I have a file thats laid out like this..
number text text text text (etc about 15 times with various text fields)
I want to take the first field, "number", subtract 100 from it, and then put it back in the file. a simple little manipulation of the first field in... (4 Replies)
I need to achieve the following.....I seached the forum but could not find it...
This is I have in a file...
"CH","TIA","10/27/2006",000590
I need the date in the third field to be attached to fileas 20061027_test.txt
How do I do it. (6 Replies)
I am tryin to figure out how to extract interested text from file
example.txt
blah blah
blah a: child1
blah a: child2
blah b: parent1
blah blah
blah ....
blah a: child21
blah a: child22
blah a: child23
blah b: parent2
this kinda text repeats .. number of children is... (6 Replies)
EDIT : This is for perl
@data2 = grep(/$data/, @list_now);
This gives me @data2 as
Printing data2 11 testzone1 running /zones/testzone1 ***-*****-****-*****-***** native shared
But I really cant access data2 by its individual elements.
$data2 is the entire list, while $data,2,3...... (1 Reply)
Hello
I am currently having problems in mapulating a certain file which contains vaious data.
Belos is a sample content
Event=<3190>
Client IP=<151.111.11.143> DNS=<abc.sbc.com> TransCount=<139>
Client IP=<150.222.133.163> DNS=<xyz.yuu.com> TransCount=<3734>
Event=<3120>
Client... (11 Replies)
Dear All,
I have a question. So for the following sample file I would like to collect information about entries in $F, $F & $F so as to acheive the following output as shown below SK1.chr01 854 levure5 A G 225 . ... (7 Replies)
Hi,
My requirement is that ,i need to generate data file consisting of very high number of transactions.
I need to take the header for the file containing pipe delimited columns from a different file(Header.txt containing headers for different formats).Please help me in this regard.
Also for... (5 Replies)
If a have a variable with a first and last name.
and say the variable looks like this...
FIRST LAST
how could process the variable to look like
First .L
bash 3.2 (osx) (3 Replies)
Discussion started by: briandanielz
3 Replies
LEARN ABOUT DEBIAN
glam2format
GLAM2FORMAT(1) glam2 Manual GLAM2FORMAT(1)NAME
glam2format - converts GLAM2 motifs to FASTA or MSF format
SYNOPSIS
glam2format [options] my_format my_motif.glam2
Formats: fasta, msf.
DESCRIPTION
glam2format reads in a motif found by glam2, and writes it in a standard alignment format (FASTA-with-gaps or MSF). This enables the
alignment to be passed to third-party software, including graphical visualization tools such as Kalignvu, Boxshade, and WebLogo. On the
other hand, not all the motif information is preserved: in particular, the key positions are lost. Only the top motif in glam2 output is
converted.
OPTIONS (DEFAULT SETTINGS)-o
Output file (stdout).
-c
Make a compact alignment. By default, residues that are inserted between key positions are written as unaligned with each other. This
best reflects glam2's intention, but it can make the alignment large and full of gaps. With -c, inserted residues are written as
arbitrarily aligned with each other, just as they appear in the glam2 output.
-f
Sequence file to make a "global" alignment by adding flanking sequences from the original FASTA-format sequence file. The flanking
sequences will be written as either unaligned with each other or arbitrarily aligned, depending on the -c option. The sequences should
have unique names and their order should be unchanged.
SEE ALSO boxshade(1), glam2(1), glam2mask(1), glam2-purge(1), glam2scan(1)
The full Hypertext documentation of GLAM2 is available online at http://bioinformatics.org.au/glam2/ or on this computer in
/usr/share/doc/glam2/.
REFERENCE
If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey (2008) Discovering sequence motifs with arbitrary insertions and
deletions, PLoS Computational Biology (in press).
AUTHORS
Martin Frith
Author of GLAM2.
Timothy Bailey
Author of GLAM2.
Charles Plessy <plessy@debian.org>
Formatted this manpage in DocBook XML for the Debian distribution.
COPYRIGHT
The source code and the documentation of GLAM2 are released in the public domain.
GLAM2 1056 05/19/2008 GLAM2FORMAT(1)