Sponsored Content
Top Forums Shell Programming and Scripting merge two text files of different size on common index Post 302518652 by LMHmedchem on Sunday 1st of May 2011 02:20:03 PM
Old 05-01-2011
That worked great, except the header row never made it to the output file.

---------- Post updated at 02:16 PM ---------- Previous update was at 12:24 AM ----------

I have been working on the header row. If I do,
Code:
   awk 'NR==1 {printf "%s\t%s\t%s\t%s\t%s\t",  $1, $2, $3, $4, $5 }' $a2 > temp.txt
   awk 'NR==1 {$1=$2=""}1' $a1 >> temp.txt

This comes close, but prints the entire a1 file to temp.txt, not just the first row. This takes the first 5 fields from file a2 and then is supposed to add from field 3 to the last field of file a1. This will gob together the header row, and then I can use the command above to fill in the rest of the file.

---------- Post updated at 02:20 PM ---------- Previous update was at 02:16 PM ----------

This seems to work, but overall this seems an odd way of adding the header row.
Code:
   awk 'NR==1 {printf "%s\t%s\t%s\t%s\t%s\t",  $1, $2, $3, $4, $5 }' $a2 > temp.txt
   awk '{$1=$2=""} NR==1{print $0}' $a1 >> temp.txt

LMHmedchem
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Merge files of differrent size with one field common in both files using awk

hi, i am facing a problem in merging two files using awk, the problem is as stated below, file1: A|B|C|D|E|F|G|H|I|1 M|N|O|P|Q|R|S|T|U|2 AA|BB|CC|DD|EE|FF|GG|HH|II|1 .... .... .... file2 : 1|Mn|op|qr (2 Replies)
Discussion started by: shashi1982
2 Replies

2. Shell Programming and Scripting

How to remove common file names from text files

I'm running on freebsd -- with a default shell of csh. I have two files named A and B. Each line of each file contains a file name. How can I write a script that removes all the file names in file B from A. I tried to use perl to create a huge regular expression with "|" separating the file... (2 Replies)
Discussion started by: siegfried
2 Replies

3. UNIX for Dummies Questions & Answers

Writing a loop to merge multiple files by common column

I have 100 data files labelled 250.1.txt through 250.100.txt. The second column of the data files partially match (there is about %90 overlap). Each data file has 4 columns. I want the merge all these text files by the matching values in the second column. In the output, the first column should... (1 Reply)
Discussion started by: evelibertine
1 Replies

4. UNIX for Dummies Questions & Answers

Merge two files with common IDs but unequal number of rows

Hi, I have two files that I would like to merge and think that there should be a solution using awk. The files look something like this: file 1 IDX1 IDY1 IDX2 IDY2 IDX3 IDY3 file 2 IDY1 dataA data1 IDY2 dataB data2 IDY3 dataC data3 Desired output IDX1 IDY1 dataA data1 IDX2 ... (5 Replies)
Discussion started by: katie8856
5 Replies

5. Shell Programming and Scripting

script to merge two files on an index

I have a need to merge two files on the value of an index column. input file 1 id filePath MDL_NUMBER 1 MFCD00008104.mol MFCD00008104 2 MFCD00012849.mol MFCD00012849 3 MFCD00037597.mol MFCD00037597 4 MFCD00064558.mol MFCD00064558 5 MFCD00064559.mol MFCD00064559 input file 2 ... (9 Replies)
Discussion started by: LMHmedchem
9 Replies

6. Shell Programming and Scripting

Merge files based on both common and uncommon rows

Hi, I have two files A (2190 rows) and file B (1100 rows). I want to merge the contents of two files based on common field, also I need the unmatched rows from file A file A: ABC XYZ PQR file B: >LMN|chr1:11000-12456: >ABC|chr15:176578-187678: >PQR|chr3:14567-15866: output... (3 Replies)
Discussion started by: Diya123
3 Replies

7. Shell Programming and Scripting

Find matched patterns in a column of 2 files with different size and merge them

Hi, i have input files like below:- input1 Name Seq_ID NewID Scores MT1 A0QZX3 1.65 277.4 IVO A0QZX3 1.65 244.5 HPO A0QZX3 1.65 240.5 RgP A0Q3PP 5.32 241.0 GX1 LPSZ3S 96.1 216.9 MEL LPSS3X 4.23 204.1 LDD LPSS3X 4.23 100.2 input2 Fac AddName NewID ... (9 Replies)
Discussion started by: redse171
9 Replies

8. Shell Programming and Scripting

Merge multiple files with common header

Hi all, Say i have multiple files x1 x2 x3 x4, all with common header (date, time, year, age),, How can I merge them to one singe file "X" in shell scripting Thanks for your suggestions. (2 Replies)
Discussion started by: msarguru
2 Replies

9. UNIX for Dummies Questions & Answers

Merge selective columns from files based on common key

Hi, I am trying to selectively merge two files based on keys reported in the 1st column. File1: #file1-header1 file1-header2 111 qwe rtz uio 198 asd fgh jkl 165 yxc 789 poi uzt rew 89 lkj File2: #file2-header2 file2-header2 165 ghz nko2 ... (2 Replies)
Discussion started by: dovah
2 Replies

10. Shell Programming and Scripting

Merge multiple tab delimited files with index checking

Hello, I have 40 data files where the first three columns are the same (in theory) and the 4th column is different. Here is an example of three files, file 2: A_f0_r179_pred.txt Id Group Name E0 1 V N(,)'1 0.2904 2 V N(,)'2 0.3180 3 V N(,)'3 0.3277 4 V N(,)'4 0.3675 5 V N(,)'5 0.3456 ... (8 Replies)
Discussion started by: LMHmedchem
8 Replies
set_color(1)                                                           fish                                                           set_color(1)

NAME
set_color - set_color - set the terminal color set_color - set the terminal color Synopsis set_color [-v --version] [-h --help] [-b --background COLOR] [COLOR] Description Change the foreground and/or background color of the terminal. COLOR is one of black, red, green, brown, yellow, blue, magenta, purple, cyan, white and normal. o -b, --background Set the background color o -c, --print-colors Prints a list of all valid color names o -h, --help Display help message and exit o -o, --bold Set bold or extra bright mode o -u, --underline Set underlined mode o -v, --version Display version and exit Calling set_color normal will set the terminal color to whatever is the default color of the terminal. Some terminals use the --bold escape sequence to switch to a brighter color set. On such terminals, set_color white will result in a grey font color, while set_color --bold white will result in a white font color. Not all terminal emulators support all these features. This is not a bug in set_color but a missing feature in the terminal emulator. set_color uses the terminfo database to look up how to change terminal colors on whatever terminal is in use. Some systems have old and incomplete terminfo databases, and may lack color information for terminals that support it. Download and install the latest version of ncurses and recompile fish against it in order to fix this issue. Version 1.23.1 Sun Jan 8 2012 set_color(1)
All times are GMT -4. The time now is 05:39 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy