openmpi - initialization failed


 
Thread Tools Search this Thread
Top Forums UNIX for Advanced & Expert Users openmpi - initialization failed
# 1  
Old 09-08-2012
openmpi - initialization failed

Hi everybody,

my problem is the following:
I'm trying to run an openmpi program on a cluster (atlasz.elte.hu, it's in hungarian, but you can try google translate),
but I always got this error:

Fatal error in MPI_Init: Other MPI error, error stack:
MPIR_Init_thread(394)...........: Initialization failed
MPID_Init(121)..................:
MPIDI_Populate_vc_node_ids(1219):
MPID_Get_max_node_id(798).......: PMI_KVS_Commit returned -1

I am doing it according to the manual, for example, here is my script:

#!/bin/bash

mpirun.openmpi /users/jkobori/boxfit/out/boxfit boxfitsettings.txt

which I am runnig with the sbatch -p hpc2009 -N 4 -B 2:4:1 s.sh line.
This is the way it should be done, but it doesn't work for me.
Can You help me out?

If any additional info is needed, please, tell me.

Regards,
Joe
Login or Register to Ask a Question

Previous Thread | Next Thread

10 More Discussions You Might Find Interesting

1. UNIX for Advanced & Expert Users

Trying to use a convoluted for loop with VLC and Parallel or OpenMPI with no success. Help?

I have about 12,000,000 mod files I'm trying to turn into a test of "unlimited cloud storage" by running them all through VLC and blowing them into mp3 files. I can get this to work serially but when trying to use openMPI or Parallel, something in the syntax is tripping it up some. Here is an... (1 Reply)
Discussion started by: sparticus414
1 Replies

2. Shell Programming and Scripting

Variable initialization

Hallo Team, I have a simple request and i would appreciate your help. I would like to use two dates in my script lets: A=$(date +"%d %B %Y") echo $A 23 June 2014 That's awesome now we cooking. Now i want B to be on the previous month eg: echo $B Should give me 23 May 2014 I would... (9 Replies)
Discussion started by: kekanap
9 Replies

3. Programming

Cannot run MPI job across nodes using OpenMPI in F17

I am new in Linux and clustering. I am setting up a Beowulf Cluster using several PCs according to this guide "Beowulf How-To" I have setup and configure accordingly except for NFS part. Because I am not requiring it for my application. I have set my ssh to login each other without password. I... (1 Reply)
Discussion started by: nsw1216
1 Replies

4. Shell Programming and Scripting

Initialization error

new to shell scripting. below line is showing error in script. ${parameter:=word} in the o/p first it shows the below error. word: not found. and then in next line print "word" ---------------- p2: word: not found. word --------------------------- OS is AIX and shell is... (12 Replies)
Discussion started by: scriptor
12 Replies

5. Shell Programming and Scripting

Declaring variables without initialization

I get an error in my shell script that line 1: )unexpected. Line 1 in my script (using sh by the way) is the variable I declared but did not initialize it. result= Is this wrong? How can I fix it? I am using the variable later in the program, so I figured I could just declare it first... (4 Replies)
Discussion started by: itech4814
4 Replies

6. Programming

Problem with OpenMPI

OK, I hope you can help me here: I'm trying to crack a hash using John the Ripper. (BindShell.Net: John The Ripper MPI Patch) I'm runnig it on a cluster system using OpenMPI. But it is not working properly. If i try to run it, i get the following error: Any idea what can be wrong? Happen on... (3 Replies)
Discussion started by: chrisperry
3 Replies

7. Shell Programming and Scripting

little confusion about variable initialization.

Whenever i execute the below scriptlet with out proper file name it deletes /tmp directory . I guess this is because value of variable a didnt get initialized and there for rm -rf /tmp/ get executed and entire /tmp directory get deleted. How would i avoid any empty variables to be used in... (9 Replies)
Discussion started by: pinga123
9 Replies

8. Programming

/usr/bin/ld: warning: libgfortran.so.1, needed by /opt/openmpi/lib/libmpi_f90.so, may

hello, i get these warnings on make(ing) /usr/bin/ld: warning: libgfortran.so.1, needed by /opt/openmpi/lib/libmpi_f90.so, may conflict with libgfortran.so.3 /usr/bin/ld: warning: libgfortran.so.1, needed by /usr/lib/gcc/x86_64-redhat-linux6E/4.3.2/../../../liblapack.a, may conflict with... (1 Reply)
Discussion started by: sreekar
1 Replies

9. Programming

Char initialization

Hi All, char a="\0"; a) a contains \0 a contains garbage value b) a contains \ a contains 0 a contains garbage value Pls, let me know correct result is a or b. I guess a. Thanks, Naga:cool: (2 Replies)
Discussion started by: Nagapandi
2 Replies

10. Programming

Struct Initialization

Hi We are using a code generator for initializing structures with the #define macro. Compiling it with the GCC 2.8.1 (with -ansi) it OK. But when we are using the SUN C 5.0 compiler it screams. Following is a code sample: #include <stdlib.h> #include <stdio.h> typedef struct TEST3 {... (4 Replies)
Discussion started by: amatsaka
4 Replies
Login or Register to Ask a Question
cmdeleteconf(1m)														  cmdeleteconf(1m)

NAME
cmdeleteconf - Delete either the cluster or the package configuration SYNOPSIS
cmdeleteconf [-f] [-v] [-c cluster_name] [[-p package_name]...] DESCRIPTION
cmdeleteconf deletes either the entire cluster configuration, including all its packages, or only the specified package configuration. If neither cluster_name nor package_name is specified, cmdeleteconf will delete the local cluster's configuration and all its packages. If the local node's cluster configuration is outdated, cmdeleteconf without any argument will only delete the local node's configuration. If only the package_name is specified, the configuration of package_name in the local cluster is deleted. If both cluster_name and pack- age_name are specified, the package must be configured in the cluster_name, and only the package package_name will be deleted. cmdelete- conf with only cluster_name specified will delete the entire cluster configuration on all the nodes in the cluster, regardless of the con- figuration version. The local cluster is the cluster that the node running the cmdeleteconf command belongs to. Only a superuser, whose effective user ID is zero (see id(1) and su(1)), can delete the configuration. To delete the cluster configuration, halt the cluster first. To delete a package configuration you must halt the package first, but you do not need to halt the cluster (it may remain up or be brought down). To delete the package VxVM-CVM-pkg (HP-UX only), you must first delete all packages with STORAGE_GROUP defined. While deleting the cluster, if any of the cluster nodes are powered down, the user can choose to continue deleting the configuration. In this case, the cluster configuration on the down node will remain in place and, therefore, be out of sync with the rest of the cluster. If the powered-down node ever comes up, the user should execute the cmdeleteconf command with no argument on that node to clean up the config- uration before doing any other Serviceguard command. Options cmdeleteconf supports the following options: -f Force the deletion of either the cluster configuration or the package configuration. -v Verbose output will be displayed. -c cluster_name Name of the cluster to delete. The cluster must be halted already, if intending to delete the cluster. -p package_name Name of an existing package to delete from the cluster. The package must be halted already. There should not be any packages in the cluster with STORAGE_GROUP defined before having a package_name of VxVM-CVM-pkg (HP-UX only). RETURN VALUE
Upon completion, cmdeleteconf returns one of the following values: 0 Successful completion. 1 Command failed. EXAMPLES
The high availability environment contains the cluster, clusterA , and a package, pkg1. To delete package pkg1 in clusterA, do the following: cmdeleteconf -f -c clusterA -p pkg1 To delete the cluster clusterA and all its packages, do the following: cmdeleteconf -f -c clusterA AUTHOR
cmdeleteconf was developed by HP. SEE ALSO
cmcheckconf(1m), cmapplyconf(1m), cmgetconf(1m), cmmakepkg(1m), cmquerycl(1m). Requires Optional Serviceguard Software cmdeleteconf(1m)