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Bio::Phenotype::Measure(3pm) User Contributed Perl Documentation Bio::Phenotype::Measure(3pm) NAME
Bio::Phenotype::Measure - Representation of context/value(-range)/unit triplets SYNOPSIS
use Bio::Phenotype::Measure; my $measure = Bio::Phenotype::Measure->new( -context => "length", -description => "reduced length in 4(Tas1r3)", -start => 0, -end => 15, -unit => "mm", -comment => "see also Miller et al" ); print $measure->context(); print $measure->description(); print $measure->start(); print $measure->end(); print $measure->unit(); print $measure->comment(); print $measure->to_string(); DESCRIPTION
Measure is for biochemically defined phenotypes or any other types of measures. FEEDBACK
Mailing Lists User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists Support Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. Reporting Bugs Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: https://redmine.open-bio.org/projects/bioperl/ AUTHOR
Christian M. Zmasek Email: czmasek-at-burnham.org or cmzmasek@yahoo.com WWW: http://monochrome-effect.net/ Address: Genomics Institute of the Novartis Research Foundation 10675 John Jay Hopkins Drive San Diego, CA 92121 APPENDIX
The rest of the documentation details each of the object methods. new Title : new Usage : my $me = Bio::Phenotype::Measure->new( -context => "length", -description => "reduced length in 4(Tas1r3)", -start => 0, -end => 15, -unit => "mm", -comment => "see Miller also et al" ); Function: Creates a new Measure object. Returns : A new Measure object. Args : -context => the context -description => a description -start => the start value -end => the end value -unit => the unit -comment => a comment init Title : init() Usage : $measure->init(); Function: Initializes this Measure to all "". Returns : Args : context Title : context Usage : $measure->context( "Ca-conc" ); or print $measure->context(); Function: Set/get for the context of this Measure. Returns : The context. Args : The context (optional). description Title : description Usage : $measure->description( "reduced in 4(Tas1r3)" ); or print $measure->description(); Function: Set/get for the description of this Measure. Returns : A description. Args : A description (optional). start Title : start Usage : $measure->start( 330 ); or print $measure->start(); Function: Set/get for the start value of this Measure. Returns : The start value. Args : The start value (optional). end Title : end Usage : $measure->end( 459 ); or print $measure->end(); Function: Set/get for the end value of this Measure. Returns : The end value. Args : The end value (optional). unit Title : unit Usage : $measure->unit( "mM" ); or print $measure->unit(); Function: Set/get for the unit of this Measure. Returns : The unit. Args : The unit (optional). comment Title : comment Usage : $measure->comment( "see also Miller et al" ); or print $measure->comment(); Function: Set/get for an arbitrary comment about this Measure. Returns : A comment. Args : A comment (optional). to_string Title : to_string() Usage : print $measure->to_string(); Function: To string method for Measure objects. Returns : A string representations of this Measure. Args : perl v5.14.2 2012-03-02 Bio::Phenotype::Measure(3pm)
