10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have the input file like this.
Input file: 12.txt
1) There are one or more than one <tr> tags in same line.
2) Some tr tags may have one <td> or more tna one <td> tags within it.
3) Few <td> tags having "<td> </td>". Few having more than one " " entry in it.
<tr> some td... (4 Replies)
Discussion started by: thomasraj87
4 Replies
2. How to Post in the The UNIX and Linux Forums
Hi All,
Please help me and guide me to write a bash/shell script on Linux box to delete parent entry with all their child entries.
example:
Parent is :
----------
dn: email=yogesh.kumar@wipro.com, o=wipro, o=in
child is:
----------
dn: cn: yogesh kumar, email=yogesh.kumar@wipro.com,... (1 Reply)
Discussion started by: Chand
1 Replies
3. Shell Programming and Scripting
Hi,
I have one file with one column and several hundred entries
File1:
NA1
NA2
NA3And now I need to run a command within a mapping aligner tool to insert these sample names into a sequence alignment file (SAM) such that they look like this
@RG ID:Library1 SM:NA1 PL:Illumina ... (7 Replies)
Discussion started by: nans
7 Replies
4. Shell Programming and Scripting
Hi,
I have a file which contains few columns and the first column has the file names, and I would like to identify the missing file sequence number form the file and would copy to another file. My files has data in below format.
APKRISPSIN320131231201319_0983,1,54,125,... (5 Replies)
Discussion started by: rramkrishnas
5 Replies
5. Shell Programming and Scripting
Hi guys,
Does anyone know how to get a string of sequence from other file? Should I use awk? Please see below. Thanks!
LIST_FILE:
>NAME1
>NAME3
>NAME5
>NAME7
>NAME8
SEQ_FILE:
>NAME1 LEN75
100100101001010001010
>NAME2 LEN90
111010101010101101101
>NAME3 LEN27
101000101001010010101... (5 Replies)
Discussion started by: narachaid
5 Replies
6. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
7. UNIX for Dummies Questions & Answers
Hi Everyone,
I am new in the world of UNIX and Shell scripting.
I am working with a sequence file that looks like this:
>contig00001 length=128 numreads=2
aTGTGCTGGgTGGGTGCCTGTTgCCccATGCTCCAGTtCAGGATTtCAGGCAttCTCATG
TCCAGCATTTCTATTTAATCCTGCTGCTGGACTTGGGTGGtCTCAGTCtGGGAAGTGAGC
tGTCTGTG... (8 Replies)
Discussion started by: Fahmida
8 Replies
8. Shell Programming and Scripting
How do I add the sequence number to the file? I have a file seperated by commas.
appusage,243,jsdgh,798
appusage,876,0989,900
.
.
appusage,82374,ajfgdh,9284
The output would be as below
1,appusage,243,jsdgh,798
2,appusage,876,0989,900
.
.
100,appusage,876,0989,900 (5 Replies)
Discussion started by: smee
5 Replies
9. Shell Programming and Scripting
have this shl that will FTP a file from the a directory in windows to UNIX, It get the name of the file stored in this variable $UpLoadFileName then put in the local directory LocalDir="${MPATH}/xxxxx/dat_files" that part seems to be working, but then I need to take that file and rename, I am using... (3 Replies)
Discussion started by: rechever
3 Replies
10. Shell Programming and Scripting
Hi
I want to be able to extract a sequence of n lines from a file.
ideas, commands and suggestions would be highly appreciated.
Thanks (4 Replies)
Discussion started by: 0ktalmagik
4 Replies