10 More Discussions You Might Find Interesting
1. AIX
This's my problem
perl: warning: Setting locale failed.
perl: warning: Please check that your locale settings:
LC_ALL = "en_US.UTF-8",
LC__FASTMSG = "true",
LC_MESSAGES = "",
LC_CTYPE = "en_US.UTF-8",
LC_TYPE = "en_US.UTF-8",
LANG = "EN_US"... (1 Reply)
Discussion started by: bobochacha29
1 Replies
2. Shell Programming and Scripting
In the attached file I get this error. Thank you :).
C:\cygwin\home\cmccabe\windows_annovar.sh: line 117: perl: command not found (17 Replies)
Discussion started by: cmccabe
17 Replies
3. Shell Programming and Scripting
cat "C:\Program Files\BioDiscovery\Nexus 7\Organisms\Human\NCBI Build 37\refseq_genes.txt" | perl -aF/\\t/ -lne '$F=~/_/ and next; @st=split/\,/,$F;@en=split/\,/,$F;print join("\t",$F,$st,$en,$F) for (0..$#st)' | sort -u > refseq_exons.bed
sort: open failed: -u: No such file or directory
... (6 Replies)
Discussion started by: cmccabe
6 Replies
4. Shell Programming and Scripting
New to perl, trying to decipher and fix the below error: Thanks.
$ perl -ne 'chomp; system ("perl table_annovar.pl $_ humandb/ -buildver hg19 -protocol refGene,popfreq_all -operation g,f -otherinfo”)' < file.txt
Can't find string terminator '"' anywhere before EOF at -e line 1. (2 Replies)
Discussion started by: cmccabe
2 Replies
5. Shell Programming and Scripting
I have a PERL command line embedded in a UNIX script. The script doesn't handle errors coming out of this command. I'm processing large files and occassionally I run out of disk space and end up with half a file.
perl -p -e 's/\n/\r\n/g' < TR_TMP_$4 > $4
How do I handle errors coming out... (1 Reply)
Discussion started by: OTChancy
1 Replies
6. Shell Programming and Scripting
At this line in the perl script,
@databases = `crs_stat | grep .db | awk -F. '{print $2}'`;
It is throwing this error.
Use of uninitialized value in concatenation (.) or string at ........
Looks like it didn't like the 2 dots I have in the statements. Is there a way to get around this... (3 Replies)
Discussion started by: MKNENI
3 Replies
7. Shell Programming and Scripting
Hi, everyone!!
i am new to perl programming.. plz help me.
#!C:/perl/bin
use warnings;
use strict;
use Text::CSV_XS;
my @rows = "";
my $row;
my $count;
my $fh;
my @fields = "";
my $csv = Text::CSV_XS->new ({binary =>1}) or
die "cannot use CSV:" .Text::CSV->error_diag ();
open... (3 Replies)
Discussion started by: kvth
3 Replies
8. Shell Programming and Scripting
Hi All,
I was trying to run the below program, its working perfectly for if condition however its not go to else conditing, if the input is wrong. what is the issue in this code. kindly help me !!!
print "Enter your Number \n";
$name = <STDIN>;
if ($name ="91111")
{
@dirlist1 =... (4 Replies)
Discussion started by: adaleru
4 Replies
9. Shell Programming and Scripting
Hi all
I keep getting a segmentation fault error while running the script below.
#!/usr/bin/perl -w
use CGI ':standard';
use GD::Graph::pie;
use strict;
use warnings;
sub trim($)
{
my $string = shift;
$string =~ s/^\s+//;
$string =~ s/\s+$//;
... (4 Replies)
Discussion started by: pietie
4 Replies
10. Programming
hi,
I am trying following TELNET script on SunOS terminal01 5.8 Generic_108528-27 sun4u sparc SUNW,Sun-Blade-100.
I am stuck up due to an Error I cannot fix out. please can some one here can help me out. I must be thankful.
code:
Error
output for perl -V
THX and... (3 Replies)
Discussion started by: Asteroid
3 Replies
06-20-2008
Perl Error