1. Programming

hi, I am trying following TELNET script on SunOS terminal01 5.8 Generic_108528-27 sun4u sparc SUNW,Sun-Blade-100. I am stuck up due to an Error I cannot fix out. please can some one here can help me out. I must be thankful. code: Error output for perl -V THX and... (3 Replies)

2. Shell Programming and Scripting

Hi all I keep getting a segmentation fault error while running the script below. #!/usr/bin/perl -w use CGI ':standard'; use GD::Graph::pie; use strict; use warnings; sub trim($) { my $string = shift; $string =~ s/^\s+//; $string =~ s/\s+$//; ... (4 Replies)

3. Shell Programming and Scripting

Hi All, I was trying to run the below program, its working perfectly for if condition however its not go to else conditing, if the input is wrong. what is the issue in this code. kindly help me !!! print "Enter your Number \n"; $name = <STDIN>; if ($name ="91111") { @dirlist1 =... (4 Replies)

4. Shell Programming and Scripting

Hi, everyone!! i am new to perl programming.. plz help me. #!C:/perl/bin use warnings; use strict; use Text::CSV_XS; my @rows = ""; my $row; my $count; my $fh; my @fields = ""; my $csv = Text::CSV_XS->new ({binary =>1}) or die "cannot use CSV:" .Text::CSV->error_diag (); open... (3 Replies)

5. Shell Programming and Scripting

At this line in the perl script, @databases = `crs_stat | grep .db | awk -F. '{print $2}'`; It is throwing this error. Use of uninitialized value in concatenation (.) or string at ........ Looks like it didn't like the 2 dots I have in the statements. Is there a way to get around this... (3 Replies)

6. Shell Programming and Scripting

I have a PERL command line embedded in a UNIX script. The script doesn't handle errors coming out of this command. I'm processing large files and occassionally I run out of disk space and end up with half a file. perl -p -e 's/\n/\r\n/g' < TR_TMP_$4 > $4 How do I handle errors coming out... (1 Reply)

7. Shell Programming and Scripting

New to perl, trying to decipher and fix the below error: Thanks. $ perl -ne 'chomp; system ("perl table_annovar.pl $_ humandb/ -buildver hg19 -protocol refGene,popfreq_all -operation g,f -otherinfo”)' < file.txt Can't find string terminator '"' anywhere before EOF at -e line 1. (2 Replies)

8. Shell Programming and Scripting

cat "C:\Program Files\BioDiscovery\Nexus 7\Organisms\Human\NCBI Build 37\refseq_genes.txt" | perl -aF/\\t/ -lne '$F=~/_/ and next; @st=split/\,/,$F;@en=split/\,/,$F;print join("\t",$F,$st,$en,$F) for (0..$#st)' | sort -u > refseq_exons.bed sort: open failed: -u: No such file or directory ... (6 Replies)

9. Shell Programming and Scripting

In the attached file I get this error. Thank you :). C:\cygwin\home\cmccabe\windows_annovar.sh: line 117: perl: command not found (17 Replies)

10. AIX

This's my problem perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LC_ALL = "en_US.UTF-8", LC__FASTMSG = "true", LC_MESSAGES = "", LC_CTYPE = "en_US.UTF-8", LC_TYPE = "en_US.UTF-8", LANG = "EN_US"... (1 Reply)