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Shell Programming and Scripting

awk reformat file

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# 15  
Old 01-01-2014
That will work, but it will have an empty line as the first line.
# 16  
Old 01-01-2014
Shorter and without leading blank line:
Code:
awk 'NR>1{print ">"$1;$1=z}$0' RS=">" FS="\n" OFS="" inputfile

Code:
$ cat f3
>YAL069W-1.334 Putative promoter
CCACACCACACCCACACACC 
ACACCACACCCACACACACA
ACAGCCCTAATCTAACCC 
>YAL068C-7235.2170 Putative ABC sequence
TACGAGAATAATTT 
ACGTAAATGAAGTT
TATATATAAA 
>gi|31044174|gb|AY143560.1| Tintinnopsis
GAAACTGCGAATGGCTCATTAAAA
TAATTCTAGAGCTAATACATGCTG
AGCATCTGCTATTGTGGTGACTCATAGT
>gi|31044185|gb|AY143571.1|  
ATTACCCAATCCT 
GGGCACCACCAG
$ awk 'NR>1{print ">"$1;$1=z}$0' RS=">" FS="\n" OFS="" f3
>YAL069W-1.334 Putative promoter
CCACACCACACCCACACACC ACACCACACCCACACACACAACAGCCCTAATCTAACCC 
>YAL068C-7235.2170 Putative ABC sequence
TACGAGAATAATTT ACGTAAATGAAGTTTATATATAAA 
>gi|31044174|gb|AY143560.1| Tintinnopsis
GAAACTGCGAATGGCTCATTAAAATAATTCTAGAGCTAATACATGCTGAGCATCTGCTATTGTGGTGACTCATAGT
>gi|31044185|gb|AY143571.1|  
ATTACCCAATCCT GGGCACCACCAG
$

Last edited by ctsgnb; 01-01-2014 at 05:20 PM..
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