10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I have a file in which the data is stored in pairs of lines. The first line (beginining with ">") is a header, the second line is a sequence.
I would like to sort the file by species name. Desired output for the example file:
I can use
sort -t'_' -k2
to alphabetize headers in the... (1 Reply)
Discussion started by: pathunkathunk
1 Replies
2. Shell Programming and Scripting
]I have a string like "/abc/cmind/def/pq/IC.2.4.6_main.64b/lnx86" and this string is given by user. But in this string instead of 64b user may passed 32 b an i need to parse this string and check wether its is 32b or 64 b and according to it i want to set appropriate flags.
How will i do this... (11 Replies)
Discussion started by: codecatcher
11 Replies
3. UNIX for Dummies Questions & Answers
So I have a bunch of files that look like this
>gi|33332323
MMKCRGVIMVVEKVMKRDGRIVPFDESRIRWAVQ---
>gi|45235353
MMKCR----VEKMRDVFFDESIRWAVQ
They go on...sequences are much longer but all in two line (fasta) format.
I want to remove duplicate pairs of ID(GI) number and sequence. I tried... (12 Replies)
Discussion started by: bakere19
12 Replies
4. Shell Programming and Scripting
I have a simple script that builds a complex program call which passes a number of parameters to the program. I'm trying to enhance the script to include the value of the command line parameter in the name of a file being created. The problem I'm having is that the parameter may include a forward... (11 Replies)
Discussion started by: pbmax626
11 Replies
5. Shell Programming and Scripting
I have a file parameters.txt which contains
151524
151525
I have another file OID.csv which contains
NE Version Object Type ID SDK param name Object OID
test1 Start: 4.2 End: 4.2 pan 151524 speed ... (5 Replies)
Discussion started by: LavanyaP
5 Replies
6. Shell Programming and Scripting
Hello,
I have property file with key value pairs separated by pipe , I am trying to write a script which reads the property file and search and print value of specific key. I tried with Sed, I am successfull.
The file is as follows
... (4 Replies)
Discussion started by: ANK
4 Replies
7. Shell Programming and Scripting
Hello,
I have a file Pairs.txt composed of 3 columns. For simplicity, this is the file:
A B C
B D W
X Y Z
Z W K
B A C
Y J Q
F M P
Y X Z
I am trying to reduce the file such that I only keep the first occurrence of any "pair". In the example above, I would only want to keep one... (6 Replies)
Discussion started by: InfoSeeker
6 Replies
8. Shell Programming and Scripting
Hi all,
I need some help with using sed/awk/other linux tools to meet the following goal:
I'm trying to take the output of /proc/net/dev:
Inter-| Receive | Transmit
face |bytes packets errs drop fifo frame compressed multicast|bytes ... (0 Replies)
Discussion started by: felbane
0 Replies
9. Shell Programming and Scripting
I have record line somthing like below with first line showing char spacing not real record line
1 | 2 | 3rd Field--------------|-4th field--| This is charcatersapcing of line
DF20000000000000000130.7890000000750
I shoudl get two line from above line
1st line should
1 | 2 | 3rd... (3 Replies)
Discussion started by: unishiva
3 Replies
10. UNIX for Dummies Questions & Answers
Hi Gurus!
I wonder if anyone can help me, I'm sure you guys can.
I have a text file which contains a lot of data on the one line as follows:
$
What I need to do is pull all of those id values out (eg 2549425) and write them to a list in a text file.
Any help would be greatly... (3 Replies)
Discussion started by: th3g0bl1n
3 Replies