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Top Forums UNIX for Beginners Questions & Answers Cannot subset ranges from another range set Post 303042674 by nezabudka on Friday 3rd of January 2020 05:39:04 AM
Old 01-03-2020
Hi
I'm a little confused. Is that necessary?
cat file
Code:
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	4	7
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	1	7
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	4	13
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	0	17
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	0	3
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	10	17
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	0	2
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	11	17

Code:
awk '
($5 >= $2 && $5 <= $3) ||
($6 <= $3 && $6 >= $2) ||
($5 < $2 && $6 > $3)    {print $0 RS ($2>$5?$2:$5) FS ($3>$6?$6:$3)}
' file

Code:
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	4	7
4 7
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	1	7
3 7
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	4	13
4 10
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	0	17
3 10
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	0	3
3 3
Ca21chr2_C_albicans_SC5314	3	10	Ca21chr2_C_albicans_SC5314	10	17
10 10

 

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kits(1) 						      General Commands Manual							   kits(1)

NAME
kits - Generates setld format distribution kits SYNOPSIS
/usr/bin/kits key-file input-path output-path [subset...] OPERANDS
The pathname of the manufacturing key file which describes the product to be kitted. Unless optional subset arguments are specified, all subsets listed in the descriptor section of the key-file are kitted. The pathname which specifies the top of a hierarchy of files. This hierarchy contains the files which are to be kitted into subsets. The name of the directory to be used to store the subset image and data files produced by the command. The names of individual subsets can be specified by optionally listing them on the command line. If they are specified, only those subsets are kitted. The kits program assumes that all other subsets for the product have been kitted and that their images are in the directory specified by output-path. The key file specified must contain descriptors for each of the optional named subsets. DESCRIPTION
The kits command produces subset images, inventories, and control files for an installation using the setld command. You need to know the key file which describes the product to be built, a hierarchy from which the component files to be kitted are to be taken, and a destina- tion directory into which the kit information is to be placed. In the output-path directory, the kits command produces a subset image file for each subset and a product_code.image file listing all the kit's subsets. In the instctrl subdirectory of output-path, kits produces an inventory file and a control file. The optional subset con- trol program for any subset in the kit is transferred to output-path/instctrl. An instctrl directory is created if none existed. RESTRICTIONS
Any subset control programs to be provided with the kit must be located in a directory named scps in the working directory where the kits program is invoked. If no subset control program is found for a subset, an empty one is created. ERRORS
The kits program was unable to find the key-file specified on the command line. The kits program was unable to find the specified input- path. The kits program was unable to find the specified output-path. The kits program cannot create an instctrl directory under output- path. Check that the user has write permission to output-path. One of the NAME, CODE, VERS, MI or ROOT values in the specified key-file is either missing or has a null value. The master inventory file pathname specified in the MI entry of the key-file cannot be found. Verify that the pathname is accessible from the current directory. There are no records in the master inventory file for a subset which is being kitted. Check the master inventory file for correctness of content and format. A subset name specified on the command line does not have a descriptor line in the key-file. Check the spelling of the subset name on the command line. Check the contents of the key-file. The compression option was specified in the key-file and an attempt to compress a subset failed. This should not happen. Run the kits program again. EXAMPLES
Produce a kit using key file ULT400.k in the current directory to package files from the hierarchy /var/kits/input, and place the results in /var/kits/output. kits OAT100.k /var/kits/input /var/kits/output Produce a kit using key file ULT400.k in the current directory to package files from the hierarchy /var/kits/input, and place the results in /var/kits/output, but create only the OATDCB100 subset. kits OAT100.k /var/kits/input /var/kits/output OATDCB100 FILES
Log of subset packaging activity SEE ALSO
invcutter(1), newinv(1), tarsets(1), setld(8) stl_comp(4), stl_ctrl(4), stl_image(4), stl_key(4), stl_mi(4), stl_scp(4) Guide to Preparing Product Kits kits(1)
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