12-27-2019
Okay, I'm sure we can help with that. A few questions for clarity though:-
- Must the filename in the fastconcatg directory be the prefix of the directory that the source was found in?
- What do we do for a directory that doesn't have a file of that name in it? We could leave an empty marker file, miss it completely or perhaps something else.
If your source files would be found be the command
ls -l org*/dnaG.fasta then that's good. The problem about so many files is that you might exceed the command line length, but we can work on that if it become a problem.
For every directory/file found, the logic could be something like:-
- Get the directory part
- Get the number from the directory part
- Copy the file to the target directory with the source directory number as a prefix
Does that match your need or have I missed the point?
Do you have any further attempts yourself that we can work through?
Kind regards,
Robin
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LEARN ABOUT CENTOS
virt-copy-in
virt-copy-in(1) Virtualization Support virt-copy-in(1)
NAME
virt-copy-in - Copy files and directories into a virtual machine disk image.
SYNOPSIS
virt-copy-in -a disk.img file|dir [file|dir ...] /destination
virt-copy-in -d domain file|dir [file|dir ...] /destination
WARNING
Using "virt-copy-in" on live virtual machines can be dangerous, potentially causing disk corruption. The virtual machine must be shut down
before you use this command.
DESCRIPTION
"virt-copy-in" copies files and directories from the local disk into a virtual machine disk image or named libvirt domain.
You can give one of more filenames and directories on the command line. Directories are copied in recursively. The final parameter must
be the destination directory in the disk image which must be an absolute path starting with a "/" character.
EXAMPLES
Update "/etc/resolv.conf" in a guest:
virt-copy-in -d MyGuest resolv.conf /etc
Upload a home directory to a guest:
virt-copy-in -d MyGuest skel /home
JUST A SHELL SCRIPT WRAPPER AROUND GUESTFISH
This command is just a simple shell script wrapper around the guestfish(1) "copy-in" command. For anything more complex than a trivial
copy, you are probably better off using guestfish directly.
OPTIONS
Since the shell script just passes options straight to guestfish, read guestfish(1) to see the full list of options.
SEE ALSO
guestfish(1), virt-cat(1), virt-copy-out(1), virt-edit(1), virt-tar-in(1), virt-tar-out(1), http://libguestfs.org/.
AUTHORS
Richard W.M. Jones ("rjones at redhat dot com")
COPYRIGHT
Copyright (C) 2011-2012 Red Hat Inc.
LICENSE
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation,
Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
BUGS
To get a list of bugs against libguestfs, use this link:
https://bugzilla.redhat.com/buglist.cgi?component=libguestfs&product=Virtualization+Tools
To report a new bug against libguestfs, use this link:
https://bugzilla.redhat.com/enter_bug.cgi?component=libguestfs&product=Virtualization+Tools
When reporting a bug, please supply:
o The version of libguestfs.
o Where you got libguestfs (eg. which Linux distro, compiled from source, etc)
o Describe the bug accurately and give a way to reproduce it.
o Run libguestfs-test-tool(1) and paste the complete, unedited output into the bug report.
libguestfs-1.22.6 2013-08-24 virt-copy-in(1)