Probably missing an obvious syntax error but another set of eyes will help. Thank you .
Code:
DIR=/home/cmccabe/Desktop/new
for RDIR in "$DIR"/R_2019* ; do ## # matching "R_2019*" to operate on desired directory and expand
S5=${RDIR##*/} ## store run with no path as S5
TRIMSTR=${RDIR%%-v5.6*} ## trim folder match in RDIR from -v5.6 and store in TRIMSTR
mv "$RDIR" "$TRIMSTR" ## move trimmed folder to directory
cd "$TRIMSTR"
STRING=$(awk -F '\n' -v RS="" -v ref="$S5" '$0 ~ ref {d=split($0, val, " "); for(i=2;i<d;i+=2) printf "%s ",val[i]; printf "\n"}' "$DIR"/f1)
for folder in *[0-9]*/ ; do
folder=${folder%/} ## remove trailing slash
if ! [[ " ${STRING/[*]} " == *\ $folder\ * ]]
then
for folder in $STRING ; do
## if $folder does not exist then make
[ -d "$folder" ]
mkdir -p "$TRIMSTR"/"$folder"/variants
break
end
fi
done
done
done
Code:
bash: syntax error near unexpected token `fi'
cmccabe@xxx:~$ done
bash: syntax error near unexpected token `done'
cmccabe@xxx:~$ done
bash: syntax error near unexpected token `done'
cmccabe@xxx:~$ done
Alright, I am sure this is a laughable question, but I don't know so I am going to ask anyway.
I have a little script I am writing to take information from one source, recode it in a certain way, and print to files for each subject I have data for. This all works perfectly. I just want to put... (6 Replies)
Hi ,
I 'm trying to check if multiple directories exist on a server, if not create the missing ones and print " creating missing directory.
how to write this in a simple script, I have made my code complex
if ; then
taskStatus="Schema extract directory exists, checking if SQL,Count and... (7 Replies)
Hi,
I am using solaris 10 OS and bash shell.just checking for small code snippet which follows below.
/export/home/vomappservers/spa/common/5.0
/export/home/vomappservers/spa/common/scripts
/export/home/vomappservers/spa/tools
/export/home/vomappservers/spa/scm5.0/SCCS... (5 Replies)
Hello All,
I have to write a shell script and use it in informatica. The script has to perform below actions:
The script gets executed from edw user.
Through the script, a DT folder has to be created under edw_sca user.
Is this scenario possible through a SHELL script or not.
... (2 Replies)
The `bash` below uses the oldest folder in the specified directory and logs it. The goes though an analysis process and creates a log. My problem is that if there are 3 folders in the directory folder1,folder2,folder3, the bash is using folder2 for the analysis eventhough folder1 is the oldest... (0 Replies)
I am trying to create subdirectories in each folder in /home/cmccabe/Desktop/NGS/test/*. When I use echo I can see each folder in the directory, but I can not seem to add the commented out portion in bold. These are the sub-directories and sub-folders I am trying to add to each folder in... (1 Reply)
In the bash below the oldest folder in a directory is selected. If there are 3folders in the directory /home/cmccabe/Desktop/NGS/test and nothing is done to them (ie. no files deleted, renamed) then the bash correctly identifies f1 as the oldest. However, if something is done to the folder then... (4 Replies)
I am trying to use bash to automate the scan of a specific directory using clamav. Having this in place is a network requirement. The below is an attempt to:
1. count the extensions (.txt, .jpeg) in a directory and write them to a virus-scan.log (section in bold)
2. scan each folder in the... (6 Replies)
In the below I am trying to create a parent directory using the R_2019 line from f1 if what above it is not empty.
I then create sub-directories under each parent if there is a match between $2 of f1 and $2. Inside each sub-folder the matching paths in $3 and $4 in f2are printed. If there is no... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT V7
rmf
RMF(1) [nmh-1.5] RMF(1)NAME
rmf - remove an nmh folder
SYNOPSIS
rmf [+folder] [-interactive | -nointeractive] [-version] [-help]
DESCRIPTION
Rmf removes all of the messages (files) within the specified (or default) folder, and then removes the folder (directory) itself.
If there are any files within the folder which are not a part of nmh, they will not be removed, and an error will be produced. If the
folder is given explicitly or the -nointeractive option is given, then the folder will be removed without confirmation. Otherwise, the
user will be asked for confirmation. If rmf can't find the current folder, for some reason, the folder to be removed defaults to `+inbox'
(unless overridden by user's profile entry "Inbox") with confirmation.
If the folder being removed is a subfolder, the parent folder will become the new current folder, and rmf will produce a message telling
the user this has happened. This provides an easy mechanism for selecting a set of messages, operating on the list, then removing the list
and returning to the current folder from which the list was extracted.
If rmf s used on a read-only folder, it will delete all the (private) sequences (i.e., "atr-seq-folder" entries) for this folder from your
context without affecting the folder itself.
Rmf irreversibly deletes messages that don't have other links, so use it with caution.
FILES
$HOME/.mh_profile The user profile
PROFILE COMPONENTS
Path: To determine the user's nmh directory
Current-Folder: To find the default current folder
Inbox: To find the default inbox
SEE ALSO rmm(1)DEFAULTS
`+folder' defaults to the current folder, usually with confirmation
`-interactive' if +folder' not given, `-nointeractive' otherwise
CONTEXT
Rmf will set the current folder to the parent folder if a subfolder is removed; or if the current folder is removed, it will make "inbox"
current. Otherwise, it doesn't change the current folder or message.
BUGS
Although intuitively one would suspect that rmf works recursively, it does not. Hence if you have a sub-folder within a folder, in order
to rmf the parent, you must first rmf each of the children.
MH.6.8 11 June 2012 RMF(1)
10-08-2019
.