Sponsored Content
Full Discussion: awk !seen[$]++ in else loop
Top Forums UNIX for Beginners Questions & Answers awk !seen[$]++ in else loop Post 303031594 by Don Cragun on Saturday 2nd of March 2019 03:13:10 PM
Old 03-02-2019
I must be missing something very basic here. If the input file has tab separated fields (as stated in post #1 in this thread), then why is any pipeline needed here? Why not just use:
Code:
sort -u -t"$(printf '\t')" -k5,5 -k12,12 "input file"

Note that the $(printf '\t') in the above can be replaced by a single literal <tab> character.

This will produce at least one line of output that is not in the output you say you want, which is the line in your sample input file:
Code:
Acropora_digitifera_protein.fasta.tsv

which has empty fields for both field #5 and field #12. Since this is a unique value for that pair of fields, it seems to meet your criteria and should be displayed, shouldn't it?

This is untested since the sample input file provided did not contain any <tab>s and I wasn't sure which <space>s should be replaced by <tab>s.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Using AWK in a for loop

Hello, I am trying to use AWK to print only the first field of numerous text files, and then overwrite these files. They are of the format 1*2,3,4,5. I have tried the following code (using tcsh): foreach f (file1 file2 file3) cat $f | awk -F'*' '{print $1}' > $f end However, I get very... (4 Replies)
Discussion started by: Jahn
4 Replies

2. UNIX for Dummies Questions & Answers

for loop in awk?

I am new to unix and have pieced together two scripts that work independently. The first checks all the filesystems and reports which are running low on space. df -m | awk 'int($4) > 75 { print $1 " has only " $3 "mb free from a total of " $2 ", this filesystem is " $4 " full! \n" }... (1 Reply)
Discussion started by: Bdawk
1 Replies

3. Shell Programming and Scripting

awk for-loop and NR

Hey, I know this is a stupid question, but it doesn't work. I have a file with 10 lines and I want to pipe the content to awk and then print line 1 til 2 into another file and then line 3-4 ... So my script looks like that, but doesn't work: cat grid_ill.pts | awk '{ for (NR=1;NR<3;NR++)... (8 Replies)
Discussion started by: ergy1983
8 Replies

4. Shell Programming and Scripting

Comparison and editing of files using awk.(And also a possible bug in awk for loop?)

I have two files which I would like to compare and then manipulate in a way. File1: pictures.txt 1.1 1.3 dance.txt 1.2 1.4 treehouse.txt 1.3 1.5 File2: pictures.txt 1.5 ref2313 1.4 ref2345 1.3 ref5432 1.2 ref4244 dance.txt 1.6 ref2342 1.5 ref2352 1.4 ref0695 1.3 ref5738 1.2... (1 Reply)
Discussion started by: linuxkid
1 Replies

5. Shell Programming and Scripting

awk - loop from a to z

Hello, I was wondering if it is possible to do a loop on letters rather than numbers with awk (gawk). Basically I used to do: echo "nothing" | gawk '{for(i=1;i<11;i++)print i}' But I would like to do something like that (which obviously does not work): echo "nothing" | gawk '{for(i in... (6 Replies)
Discussion started by: jolecanard
6 Replies

6. Shell Programming and Scripting

awk loop and using shell in awk

Hi, everyone! I have a file, when I print its $1 out it show several strings like this: AABBCC AEFJKLFG FALEF FAIWEHF What I want to do is that, after output of each record, search the string in all files in the same folder, print out the record and file name. This is what I want... (4 Replies)
Discussion started by: xshang
4 Replies

7. Shell Programming and Scripting

awk loop using array:wish to store array values from loop for use outside loop

Here's my code: awk -F '' 'NR==FNR { if (/time/ && $5>10) A=$2" "$3":"$4":"($5-01) else if (/time/ && $5<01) A=$2" "$3":"$4-01":"(59-$5) else if (/time/ && $5<=10) A=$2" "$3":"$4":0"($5-01) else if (/close/) { B=0 n1=n2; ... (2 Replies)
Discussion started by: klane
2 Replies

8. Shell Programming and Scripting

awk programming -Passing variable to awk for loop

Hi All, I am new to AWK programming. I have the following for loop in my awk program. cat printhtml.awk: BEGIN -------- <some code here> END{ ----------<some code here> for(N=0; N<H; N++) { for(M=5; M<D; M++) print "\t" D ""; } ----- } ... (2 Replies)
Discussion started by: ctrld
2 Replies

9. Shell Programming and Scripting

Using awk within a for loop

Hello, I currently have managed to get an awk function working inside a for loop that allows me to combine two files based on their headings but what I have not been able to do is print the output to files with variable names. awk ' NR==FNR {a=$0; next} /^>/ {$0 = $0" "a;} ... (2 Replies)
Discussion started by: Allie_gastrator
2 Replies

10. UNIX for Beginners Questions & Answers

awk with For loop

Hi My Requirement is to take the sum of each column below is the input file. 1 2 3 4 1 2 3 4 1 2 3 4 Initial i was using below command to achieve my desired result. however this was adding the row and not column. i am not able understand why this is happening awk... (1 Reply)
Discussion started by: scriptor
1 Replies
JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -jn m Join on the mth field of file n. If n is missing, use the mth field in each file. -o list Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. 7th Edition April 29, 1985 JOIN(1)
All times are GMT -4. The time now is 10:23 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy