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Top Forums UNIX for Beginners Questions & Answers UNIX - 2 tab delimited files, conditional column extraction Post 303014981 by RudiC on Sunday 25th of March 2018 04:17:05 AM
Old 03-25-2018
May I ask why file1 defines multiple but contiguous intervals which could be done in a single line defining min and max? E.g. 10 - 20, 20 - 30, and 30 - 40 could be condensed to 10 - 40 for Sc1 (which is what Scrutinizer's code does internally, assuming as well that intervals come in ascending order).
Would it be correct to assume that multiple interval definitions are to allow gaps between intervals? If yes, try (with e.g. the Sc1 20 30 line missing in the sample file)
Code:
awk -F"\t" '
NR == FNR       {INT[$1] = INT[$1] $2 "-" $3 FS
                 next
                }
                {split (INT[$1], T)
                 OUT = "NA"
                 for (t in T)   {split (T[t], LM, "-")
                                 if ($2 >= LM[1] && $2 < LM[2]) OUT = $4
                                }
                 print OUT
                } 

' file1 file2
NA
NA
25
40
NA
NA

With file1 from post#1, it's
Code:
100
NA
25
40
NA
NA

This User Gave Thanks to RudiC For This Post:
 

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JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -jn m Join on the mth field of file n. If n is missing, use the mth field in each file. -o list Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. 7th Edition April 29, 1985 JOIN(1)
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