I think the below will capture lines 2-6, but not line 1 (looks like 018328) is being captured by the regex. Is the syntax correct or is there a better way? Thank you .
perl
Code:
if ($FuncrefGene !~ /exonic/i && $GeneDetailrefGene=~/\D(\d+)/) { # capture the digits into $1
if ($1 > 11) { #
$1 ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign'; # Reclassify intronic variants (with distance only) based on distance to exon > 10 to Likely Benign
}
}
else {
if ($FuncrefGene !~ /exonic/i && $GeneDetailrefGene=~/(\D\d+)/) { # capture the digits after any non-digit into $1
if ($1 > 11) { #
$1 ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign'; # Reclassify intronic variants (with distance only) based on distance to exon > 10 to Likely Benign
}
}
else {
if ($FuncrefGene !~ /exonic/i) {
my ($transcript) = ($GeneDetailrefGene) =~ /(?:\.\d+[+*-])/; # Get a numeric value if exists using (.) and (+/-) and capture digits into $transcript.
$transcript ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign' if $transcript > 11; # Reclassify intronic variants (following c. nomenclature) to Likely Benign if distance greater than 10
}
}
i am using perl in win2000advanced server...
---------------------------
perl -version:
---------------------------
This is perl, v5.6.1 built for MSWin32-x86-multi-thread
(with 1 registered patch, see perl -V for more detail)
Copyright 1987-2001, Larry Wall
Binary build 638 provided by... (1 Reply)
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Some time ago I encrypted the harddrive of my notebook.
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here comes theactual scenario
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Discussion started by: cmccabe
5 Replies
LEARN ABOUT OSF1
script
script(1) General Commands Manual script(1)NAME
script - Makes a transcript of terminal session
SYNOPSIS
script [-a] [file]
The script command makes a transcript of everything printed on your terminal.
OPTIONS
Appends the transcript to file rather than writing it to file.
OPERANDS
The name of an output file that will contain the transcript of the session. If this parameter is omitted, the file typescript is written.
DESCRIPTION
The transcript is written to file, or appended to file if the -a option is given. If no file name is given, the transcript is saved in the
file typescript.
The script ends when the forked shell exits.
This program is useful when you are using a CRT and want a hard-copy record of the dialog (for example, a technical writer might create an
example of a working session this way).
If you specify the -a option and the file does not exist, it is created.
If you do not specify the -a option and the file exists, it is replaced.
RESTRICTIONS
The script command requires a streams based terminal. In single user mode, streams may not be enabled. Under these circumstances, script
will exit with no action. If you are the superuser and need to run this command in single user mode, use the following special instruc-
tions.
Enabling Streams
If it is necessary to enable a streams environment in the single user mode, enter the command /sbin/init.d/streams. This command is avail-
able to the superuser only.
SEE ALSO
Commands: autopush(8), cat(1), echo(1), strsetup(8), tee(1)
System Administration
script(1)
09-11-2017
.