I have a csv file in which there are numbers like
078976/9XXX
098754/8XXX
I want to replace the XXX with null. I want to know the command/code to do this.
I know how to replace the whole word/number. But don't know how to replace a part of it.
Thanks in advance,
Mihir (3 Replies)
I have file which as 12 columns and values like this
1,2,3,4,5
a,b,c,d,e
b,c,a,e,f
a,b,e,a,h
if you see the first column has duplicate values, I need to identify (print it to console) the duplicate value (which is 'a') and also remove duplicate values like below. I could be in two... (5 Replies)
Dear All
I need help with find and replacing a string:..
In the following example of a file named say <filename.gff> with 9 columns
1 ensembl chromosome 1 300239041 . . . ID=1;Name=chromosome:AGPv1:1:1:300239041:1
1 ensembl exon 3 104 ... (3 Replies)
Suppose that I have a string "one:#red two:#yellow three:#gr'een four:#blu^e" and I want to replace the pattern :# and the following characters in the word with nothing. The output string should look "one two three four" How can I do this with sed.
Some points to consider (a) the last word in... (1 Reply)
Hi!
I'm looking for a simple script, especially a one liner script in tcsh or bash
that will emulate the find/replace in all text apps.
I want to change all uppercase caracters to Title word (in wich only the first caracter is UpperCase and the rest is lowercase)
I can use sed command, but... (2 Replies)
Hi Everyone,
I am looking for a simple way for replacing all the files under a directory that use the server "xsgd1234dap" with "xsdr3423pap".
For Example:
In the Directory,
$pwd
/home/nick
$ grep -l "xsgd1234dap" *.sh | wc -l
119
I have "119" files that are still using... (5 Replies)
Hi all,
I want to count total no. of characters in a column. and if no. of charaters are more than 3 then it must replace it by splitted string. ie, it must place a space after 3 characters.
Ex:
21 435g asd3dd jklfjwe wer
column number 3 has 4 alphanumeric character, so it must be splitted... (3 Replies)
Hi All,
I have a XML file which is looks like as below. <<please see the attachment >>
<?xml version="1.0" encoding="UTF-8"?>
<esites>
<esite>
<name>XXX.com</name>
<storeId>10001</storeId>
<module>
... (4 Replies)
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)
05-02-2017
