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Top Forums Shell Programming and Scripting Speeding up shell script with grep Post 302994613 by RudiC on Saturday 25th of March 2017 06:20:42 AM
Old 03-25-2017
Using grep -f works, but with two files as large as indicated will take its (serious) time, and may eventually run out of memory. Try
Code:
sort master.csv new | uniq -d

, then use the resultant file in similar way (uniq -u) to extract unique values from either original file.
Comparison of both approaches on ~20k files:
Code:
time grep -ffile2 file1
real    0m0.352s
user    0m0.280s
sys     0m0.052s
time sort file[12] | uniq -d
real    0m0.037s
user    0m0.032s
sys     0m0.004s

EDIT: Times spent for two files with roughly 4E6 entries each, and about 1E6 lines overlap (on a two processor linux host):
Code:
time sort file[12] | uniq -d > f1
real    0m14.975s
user    0m27.048s
sys     0m0.792s
time sort file1 f1 | uniq -u > f2
real    0m9.331s
user    0m16.488s
sys     0m0.572s


Last edited by RudiC; 03-25-2017 at 01:22 PM..
 

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uniq(1) 							   User Commands							   uniq(1)

NAME
uniq - report or filter out repeated lines in a file SYNOPSIS
uniq [-c | -d | -u] [-f fields] [-s char] [ input_file [output_file]] uniq [-c | -d | -u] [-n] [ + m] [ input_file [output_file]] DESCRIPTION
The uniq utility will read an input file comparing adjacent lines, and write one copy of each input line on the output. The second and suc- ceeding copies of repeated adjacent input lines will not be written. Repeated lines in the input will not be detected if they are not adjacent. OPTIONS
The following options are supported: -c Precedes each output line with a count of the number of times the line occurred in the input. -d Suppresses the writing of lines that are not repeated in the input. -f fields Ignores the first fields fields on each input line when doing comparisons, where fields is a positive decimal integer. A field is the maximal string matched by the basic regular expression: [[:blank:]]*[^[:blank:]]* If fields specifies more fields than appear on an input line, a null string will be used for comparison. -s chars Ignores the first chars characters when doing comparisons, where chars is a positive decimal integer. If specified in con- junction with the -f option, the first chars characters after the first fields fields will be ignored. If chars specifies more characters than remain on an input line, a null string will be used for comparison. -u Suppresses the writing of lines that are repeated in the input. -n Equivalent to -f fields with fields set to n. +m Equivalent to -s chars with chars set to m. OPERANDS
The following operands are supported: input_file A path name of the input file. If input_file is not specified, or if the input_file is -, the standard input will be used. output_file A path name of the output file. If output_file is not specified, the standard output will be used. The results are unspeci- fied if the file named by output_file is the file named by input_file. EXAMPLES
Example 1: Using the uniq command The following example lists the contents of the uniq.test file and outputs a copy of the repeated lines. example% cat uniq.test This is a test. This is a test. TEST. Computer. TEST. TEST. Software. example% uniq -d uniq.test This is a test. TEST. example% The next example outputs just those lines that are not repeated in the uniq.test file. example% uniq -u uniq.test TEST. Computer. Software. example% The last example outputs a report with each line preceded by a count of the number of times each line occurred in the file: example% uniq -c uniq.test 2 This is a test. 1 TEST. 1 Computer. 2 TEST. 1 Software. example% ENVIRONMENT VARIABLES
See environ(5) for descriptions of the following environment variables that affect the execution of uniq: LANG, LC_ALL, LC_CTYPE, LC_MES- SAGES, and NLSPATH. EXIT STATUS
The following exit values are returned: 0 Successful completion. >0 An error occurred. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNWesu | +-----------------------------+-----------------------------+ |CSI |Enabled | +-----------------------------+-----------------------------+ |Interface Stability |Standard | +-----------------------------+-----------------------------+ SEE ALSO
comm(1), pack(1), pcat(1), sort(1), uncompress(1), attributes(5), environ(5), standards(5) SunOS 5.10 20 Dec 1996 uniq(1)
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