Need help figuring out how to merge data from a file. I have a large txt file with some data that needs to be merged from separate lines into one line.
I need to combine column 3 in a |#,#| format on lines that have a match on column 1.
Desired
I can awk and tell me there is a difference on each line but can not figure out how to perform the desired merged output. There are some entries where three lines as in Eric or none as Steve, if there where all dups I could sort and cut | merge on next line.
Hi,
I have a tab delimited flat file like this: 189 Guide de lutilisateur sur lappel conférence à trois au moyen d'adaptateurs téléphoniques <TABLE><TBODY><TR><TD><DIV class=subheader>La fonction Appel conférence à trois </DIV></TD>
\
<TD><?php print $navTree;?> vous permet de tenir un appel... (4 Replies)
Hi All,
I have a data in flat file like below. Some of the information are in second row.
111_ABCProcess ----- ----- IN 0/0
111_PQRTrimPRocess
----- ----- OI 0/0
111_ZigZagTrimProcess ----- ----- ... (1 Reply)
I've hunted and hunted but nothing seems to apply to what I need. Any help will be much appreciated!
My input file looks like (Unix):
marker,allele1,allele2
RS1002244,1,1
RS1002244,1,3
RS1002244,3,3
RS1003719,2,2
RS1003719,2,4
RS1003719,4,4
Most markers are listed 3 times but a few... (2 Replies)
I have one comma separated file (a.txt) with two or more records all matching except for the last column.
I would like to merge all matching lines into one and consolidate the last column, separated by ":". Does anyone know of a way to do this easily?
I've searched the forum but most talked... (6 Replies)
Hi,
I have one file, say file 1, that has data like below where 19900107 is the date,
19900107 12 144 129 0.7380047
19900108 12 168 129 0.3149017
19900109 12 192 129 3.2766666E-02
... (3 Replies)
Hello Everyone,
I have two files I created in a format similar to the ones found below (character position is important):
File 1:
21 Cat Y N S Y Y N N
FOUR LEGS
TAIL
WHISKERS
30 Dog N N 1 Y Y N N
FOUR LEGS
TAIL
33 Fish Y N 1 Y Y N N
FINS
43 CAR Y N S Y Y N N
WHEELS
DOORS... (7 Replies)
Dear all,
Please help me ,,,,
if I have input file like this
A_AA960715 leucine-rich repeat-containing protein GO:0006952 defense response P
A_AA960715 leucine-rich repeat-containing protein GO:0008152 metabolic process P
A_AA960715 leucine-rich... (5 Replies)
Hi All,
Need your inputs for the below.
I have 2 different servers 611 & 610, where i would be running two scripts. And would would be running one script from 611 at every 4 hours to merge the data from the 2 servers into 2 files and send a mail.
so below is the code snippet for 611:
... (3 Replies)
:confused:Hello -- i just joined the forums. I am a complete noob -- only about 1 week into learning how to program anything... and starting with linux.
I am working in Linux terminal.
I have a folder with a bunch of txt files. Each file has several lines of html code. I want to combine... (2 Replies)
Hi Experts,
I have created multiple scripts and send the output to new file, getting this output to my mailbox on daily basis.
I would like to send the all outputs to a single file, need to merge all file outputs on a single file.
For example,
Created script for
df -h > df.doc
grep... (7 Replies)
Discussion started by: seenuvasan1985
7 Replies
LEARN ABOUT CENTOS
funtbl
funtbl(1) SAORD Documentation funtbl(1)NAME
funtbl - extract a table from Funtools ASCII output
SYNOPSIS
funtable [-c cols] [-h] [-n table] [-p prog] [-s sep] <iname>
DESCRIPTION
[NB: This program has been deprecated in favor of the ASCII text processing support in funtools. You can now perform fundisp on funtools
ASCII output files (specifying the table using bracket notation) to extract tables and columns.]
The funtbl script extracts a specified table (without the header and comments) from a funtools ASCII output file and writes the result to
the standard output. The first non-switch argument is the ASCII input file name (i.e. the saved output from funcnts, fundisp, funhist,
etc.). If no filename is specified, stdin is read. The -n switch specifies which table (starting from 1) to extract. The default is to
extract the first table. The -c switch is a space-delimited list of column numbers to output, e.g. -c "1 3 5" will extract the first
three odd-numbered columns. The default is to extract all columns. The -s switch specifies the separator string to put between columns.
The default is a single space. The -h switch specifies that column names should be added in a header line before the data is output. With-
out the switch, no header is prepended. The -p program switch allows you to specify an awk-like program to run instead of the default
(which is host-specific and is determined at build time). The -T switch will output the data in rdb format (i.e., with a 2-row header of
column names and dashes, and with data columns separated by tabs). The -help switch will print out a message describing program usage.
For example, consider the output from the following funcnts command:
[sh] funcnts -sr snr.ev "ann 512 512 0 9 n=3"
# source
# data file: /proj/rd/data/snr.ev
# arcsec/pixel: 8
# background
# constant value: 0.000000
# column units
# area: arcsec**2
# surf_bri: cnts/arcsec**2
# surf_err: cnts/arcsec**2
# summed background-subtracted results
upto net_counts error background berror area surf_bri surf_err
---- ------------ --------- ------------ --------- --------- --------- ---------
1 147.000 12.124 0.000 0.000 1600.00 0.092 0.008
2 625.000 25.000 0.000 0.000 6976.00 0.090 0.004
3 1442.000 37.974 0.000 0.000 15936.00 0.090 0.002
# background-subtracted results
reg net_counts error background berror area surf_bri surf_err
---- ------------ --------- ------------ --------- --------- --------- ---------
1 147.000 12.124 0.000 0.000 1600.00 0.092 0.008
2 478.000 21.863 0.000 0.000 5376.00 0.089 0.004
3 817.000 28.583 0.000 0.000 8960.00 0.091 0.003
# the following source and background components were used:
source_region(s)
----------------
ann 512 512 0 9 n=3
reg counts pixels sumcnts sumpix
---- ------------ --------- ------------ ---------
1 147.000 25 147.000 25
2 478.000 84 625.000 109
3 817.000 140 1442.000 249
There are four tables in this output. To extract the last one, you can execute:
[sh] funcnts -s snr.ev "ann 512 512 0 9 n=3" | funtbl -n 4
1 147.000 25 147.000 25
2 478.000 84 625.000 109
3 817.000 140 1442.000 249
Note that the output has been re-formatted so that only a single space separates each column, with no extraneous header or comment informa-
tion.
To extract only columns 1,2, and 4 from the last example (but with a header prepended and tabs between columns), you can execute:
[sh] funcnts -s snr.ev "ann 512 512 0 9 n=3" | funtbl -c "1 2 4" -h -n 4 -s " "
#reg counts sumcnts
1 147.000 147.000
2 478.000 625.000
3 817.000 1442.000
Of course, if the output has previously been saved in a file named foo.out, the same result can be obtained by executing:
[sh] funtbl -c "1 2 4" -h -n 4 -s " " foo.out
#reg counts sumcnts
1 147.000 147.000
2 478.000 625.000
3 817.000 1442.000
SEE ALSO
See funtools(7) for a list of Funtools help pages
version 1.4.2 January 2, 2008 funtbl(1)