Thank you for the suggestion it lead me to the below which produces the desired result:
Code:
for f in /home/cmccabe/Desktop/20x/percent/*.txt ; do
bname=$(basename $f)
pref=${bname%%_base_*.txt}
awk '{ sum += $2 } END { if (NR > 0) print sum / NR }' $f /home/cmccabe/Desktop/NGS/bed/bedtools/IDP_total_target_length_by_panel/IDP_unix_trim_total_target_length.bed > /home/cmccabe/Desktop/20x/coverage/${pref}_average.txt
done
Hi I have fakebook.csv as following:
F1(current date) F2(popularity) F3(name of book) F4(release date of book)
2006-06-21,6860,"Harry Potter",2006-12-31
2006-06-22,,"Harry Potter",2006-12-31
2006-06-23,7120,"Harry Potter",2006-12-31
2006-06-24,,"Harry Potter",2006-12-31... (0 Replies)
I have the files logged in the file system with names in the format of : filename_ordernumber_date_time
eg:
file_1_12012007_1101.txt
file_2_12022007_1101.txt
file_1_12032007_1101.txt
I need to find out all the files that are logged multiple times with same order number. In the above eg, I... (1 Reply)
I have a file which is
2
3
4
5
6
6
so i am writing program in C to calculate mean..
#include<stdio.h>
#include<string.h>
#include <math.h>
double CALL mean(int n , double x)
main (int argc, char **argv)
{
char Buf,SEQ;
int i;
double result = 0;
FILE *fp; (3 Replies)
Hello,
I'm new member of shell scripting and i face some difficulties. To begin, i try to write an algorithm that calculate from one directory containing nfdump files (288) the entropy of one day 24hours. Each of the file is 5 min interval
(nfdump -r nfcapd.200908250000 -s srcip) 1st
(nfdump... (0 Replies)
How can I write a script that determines the directory the user is in, and displays that path up until a particular point?
Specifically, I need to find the text "packages" in the directory name, then I need to capture that directory and the one below it.
For example, if the user is in the... (5 Replies)
I want to calculate the average line by line of some files with several lines on them, the files are identical, just want to average the 3rd columns of those files.:wall:
Example file:
File 1
001 0.046 0.667267
001 0.047 0.672028
001 0.048 0.656025
001 0.049 ... (2 Replies)
Hey guys,
Sorry for the basic question but I have a lot of files that I want to separate into groups based on filenames which I can then cat together. Eg I have:
(a_b_c.txt)
WB34_2_SLA8.txt
WB34_1_SLA8.txt
WB34_1_DB10.txt
WB34_2_DB10.txt
WB34_1_SLA8.txt
WB34_2_SLA8.txt
77_1_SLA8.txt... (1 Reply)
Hello,
I need to add a part of folder name to the files inside it. For instance the file is
HMCBackup_20150430.155027.tgz
and it is under directory /nim/dr/HMCBackup/cops22
I need to add cops22 to the file name so as it would be cops22_HMCBackup_20150430.155027.tgz
Any help in doing... (10 Replies)
In the below bash processes substitution, if there are 3 files in a directory /home/cmccabe/medex.logs/analysis.log, the filename variable is set to where these files are located.
The code does execute, the problem is that if there is a renamed file in the output directory below, it gets... (0 Replies)
My old school way is a one liner. And will search for average from SAR, to get the data receive rate. But, I dont think it is practical or accurate,. Because it calculates to off peak hours. I am planning to change it. My cron runs every 30 mins. When my cron runs, and my time is 14:47pm,, it will... (1 Reply)
Discussion started by: invinzin21
1 Replies
LEARN ABOUT CENTOS
bashbug
BASHBUG(1) General Commands Manual BASHBUG(1)NAME
bashbug - report a bug in bash
SYNOPSIS
bashbug [--version] [--help] [email-address]
DESCRIPTION
bashbug is a shell script to help the user compose and mail bug reports concerning bash in a standard format. bashbug invokes the editor
specified by the environment variable EDITOR on a temporary copy of the bug report format outline. The user must fill in the appropriate
fields and exit the editor. bashbug then mails the completed report to bug-bash@gnu.org, or email-address. If the report cannot be
mailed, it is saved in the file dead.bashbug in the invoking user's home directory.
The bug report format outline consists of several sections. The first section provides information about the machine, operating system,
the bash version, and the compilation environment. The second section should be filled in with a description of the bug. The third sec-
tion should be a description of how to reproduce the bug. The optional fourth section is for a proposed fix. Fixes are encouraged.
ENVIRONMENT
bashbug will utilize the following environment variables if they exist:
EDITOR Specifies the preferred editor. If EDITOR is not set, bashbug defaults to emacs.
HOME Directory in which the failed bug report is saved if the mail fails.
TMPDIR Directory in which to create temporary files and directories.
SEE ALSO bash(1)AUTHORS
Brian Fox, Free Software Foundation
bfox@gnu.org
Chet Ramey, Case Western Reserve University
chet@po.cwru.edu
GNU Bash-4.0 1998 July 30 BASHBUG(1)
10-05-2016
.