The below is all most working, there are sub-directories in each folder and the find and cp doesn't need to search these, as the .bam files are all in the main folder. Thank you .
I am getting an error:
Code:
cp: cannot stat ‘/home/cmccabe/nfs/exportedReports/Auto_user_S5-00580-5-Medexome_66_030/plugin_out/coverageAnalysis_out.39/IonXpress_007/scraper/link.summary.bam': No such file or directory
--- this is a subdirectory that can be excluded from the find, but I am not sure how.
Hi Friends,
Below is my requirement and i am not clear how to approach this issue in unix programming.
I have a folder with 2500 files. The files are in below format.
1234_name1.txt
1234_name123.txt
4567_name1.txt
4567_name123.txt
and i need a program which will read each file from this... (5 Replies)
I'm having problems with my bash script. I would like to find a file matching today's date in the filename, i.e. my_file_20120902.txt and then move it to a different directory, i.e. /tmp. Thanks. (1 Reply)
Hi friends,
I have one XML file having below structure :-
INput XML file :-
<?xml version="1.0" encoding="UTF-8"?>
<START>
<A=value1>
<attr name1="a1">
</A>
<B=value2>
<attr name2="b1">
<attr name3="c1">
</B>
</START>
output xml file should be
=== (3 Replies)
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
I am trying to move specific folders and subfolders within a directory using the below. I can see the folders to move and they are at the location, but I am getting an error. Thank you :).
mv -v /home/cmccabe/Desktop/NGS/API/6-10-2016{bam/{validation,coverage},bedtools /media/cmccabe/"My... (6 Replies)
Dear Experts
my scenario is as follows...
I have one source folder "Source" and 2 target folders "Target_123456" & "Target_789101". I have 2 series of files. 123456 series and 789101 series. Each series has got 3 types of fiels "Debit", "Refund", "Claims".
All files are getting... (17 Replies)
Hello all,
do you know any way i can i move folders and its content if folder is older than 1,5 days in bash?
I tried:
find /home/xyz/DATA/* -type d -ctime +1.5 -exec mv "{}" /home/xyz/move_data_here/ \;All i got was that Files from DATA /home/xyz/DATA/* ended messed up in... (1 Reply)
Hi Team,
I am new to the linux commands and I really need help . I would be really thankful if I can get some inputs.
I have below folders in the path "/home/temp"
20170428
20170427
20170429
changes
tempI need to get the files generated in the last 15 mins in all the above folders... (4 Replies)
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT OSF1
folders
folders(1) General Commands Manual folders(1)NAME
folders - list folders and contents (only available within the message handling system, mh)
SYNOPSIS
folders [+folder] [msg] [options]
OPTIONS
Lists only the name of folders, with no additional information. This is faster because the folders need not be read. Prints a list of the
valid options to this command. Lists the contents of the folder-stack. No +folder argument is allowed with this option. Re-numbers mes-
sages in the folders. Messages are re-numbered sequentially, and any gaps in the numbering are removed. The default operation is -nopack,
which does not change the numbering in the folder. Discards the top of the folder-stack, after setting the current folder to that value.
No +folder argument is allowed with this option. This corresponds to the popd operation in the C-shell; see csh(1). The -push and -pop
options are mutually exclusive: the last occurrence of either one overrides any previous occurrence of the other. Pushes the current
folder onto the folder-stack, and makes the +folder argument into the current folder. If +folder is not given, the current folder and the
top of the folder-stack are exchanged. This corresponds to the pushd operation in the C-shell; see csh(1). The -push switch and the -pop
switch are mutually exclusive: the last occurrence of either one overrides any previous occurrence of the other. Lists folders recur-
sively. Information on each folder is displayed, followed by information on any sub-folders which it contains. Displays only the total
number of messages and folders in your Mail directory. This option does not print any information about individual folders. It can be sup-
pressed using the -nototal option.
The defaults for folders are:
+folder defaults to all msg defaults to none -nofast -noheader -nototal -nopack -norecurse
DESCRIPTION
The folders command displays the names of your folders and the number of messages that they each contain.
The folders command displays a list of all the folders in your Mail directory. The folders are sorted alphabetically, each on its own line.
This is illustrated in the following example: Folder # of messages ( range ); cur msg (other files)
V2.3 has 3 messages ( 1- 3).
adrian has 20 messages ( 1- 20); cur= 2.
brian has 16 messages ( 1- 16).
chris has 12 messages ( 1- 12).
copylog has 242 messages ( 1- 242); cur= 225.
inbox+ has 73 messages ( 1- 127); cur= 127.
int has 4 messages ( 1- 4); cur= 2 (others).
jack has 17 messages ( 1- 17); cur= 17.
TOTAL= 387 messages in 8 folders.
The plus sign (+) after inbox indicates that it is the current folder. The information about the int folder includes the term (others).
This indicates that the folder int contains files which are not messages. These files may be either sub-folders, or files that do not
belong under the MH file naming scheme.
The folders command is identical to the effect of using the -all option to the folder command.
If you use folders with the +folder argument, it will display all the subfolders within the named folder. as shown in the following exam-
ple:
% folders +test Folder # of messages ( range ); cur msg (other files) test+ has 18 messages ( 1- 18);
(others). test/testone has 1 message ( 1- 1). test/testtwo has no messages.
TOTAL= 19 messages in 3 folders.
See refile(1) for more details of sub-folders.
RESTRICTIONS
MH does not allow you to have more than 100 folders at any level in your Mail directory.
PROFILE COMPONENTS
Path: To determine your MH directory
Folder-Protect: To set protections when creating a new folder
Folder-Stack: To determine the folder stack
lsproc: Program to list the contents of a folder
FILES
The user profile.
SEE ALSO csh(1), folder(1), refile(1), mhpath(1)folders(1)
09-16-2016
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