The below is all most working, there are sub-directories in each folder and the find and cp doesn't need to search these, as the .bam files are all in the main folder. Thank you .
I am getting an error:
Code:
cp: cannot stat ‘/home/cmccabe/nfs/exportedReports/Auto_user_S5-00580-5-Medexome_66_030/plugin_out/coverageAnalysis_out.39/IonXpress_007/scraper/link.summary.bam': No such file or directory
--- this is a subdirectory that can be excluded from the find, but I am not sure how.
Hi Friends,
Below is my requirement and i am not clear how to approach this issue in unix programming.
I have a folder with 2500 files. The files are in below format.
1234_name1.txt
1234_name123.txt
4567_name1.txt
4567_name123.txt
and i need a program which will read each file from this... (5 Replies)
I'm having problems with my bash script. I would like to find a file matching today's date in the filename, i.e. my_file_20120902.txt and then move it to a different directory, i.e. /tmp. Thanks. (1 Reply)
Hi friends,
I have one XML file having below structure :-
INput XML file :-
<?xml version="1.0" encoding="UTF-8"?>
<START>
<A=value1>
<attr name1="a1">
</A>
<B=value2>
<attr name2="b1">
<attr name3="c1">
</B>
</START>
output xml file should be
=== (3 Replies)
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
I am trying to move specific folders and subfolders within a directory using the below. I can see the folders to move and they are at the location, but I am getting an error. Thank you :).
mv -v /home/cmccabe/Desktop/NGS/API/6-10-2016{bam/{validation,coverage},bedtools /media/cmccabe/"My... (6 Replies)
Dear Experts
my scenario is as follows...
I have one source folder "Source" and 2 target folders "Target_123456" & "Target_789101". I have 2 series of files. 123456 series and 789101 series. Each series has got 3 types of fiels "Debit", "Refund", "Claims".
All files are getting... (17 Replies)
Hello all,
do you know any way i can i move folders and its content if folder is older than 1,5 days in bash?
I tried:
find /home/xyz/DATA/* -type d -ctime +1.5 -exec mv "{}" /home/xyz/move_data_here/ \;All i got was that Files from DATA /home/xyz/DATA/* ended messed up in... (1 Reply)
Hi Team,
I am new to the linux commands and I really need help . I would be really thankful if I can get some inputs.
I have below folders in the path "/home/temp"
20170428
20170427
20170429
changes
tempI need to get the files generated in the last 15 mins in all the above folders... (4 Replies)
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT DEBIAN
mojo::home
Mojo::Home(3pm) User Contributed Perl Documentation Mojo::Home(3pm)NAME
Mojo::Home - Detect and access the project root directory in Mojo
SYNOPSIS
use Mojo::Home;
my $home = Mojo::Home->new;
$home->detect;
DESCRIPTION
Mojo::Home is a container for home directories.
ATTRIBUTES
Mojo::Home implements the following attributes.
"app_class"
my $class = $home->app_class;
$home = $home->app_class('Foo::Bar');
Application class.
METHODS
Mojo::Home inherits all methods from Mojo::Base and implements the following new ones.
"new"
my $home = Mojo::Home->new;
my $home = Mojo::Home->new('/home/sri/myapp');
Construct a new Mojo::Home object.
"detect"
$home = $home->detect;
$home = $home->detect('My::App');
Detect home directory from the value of the "MOJO_HOME" environment variable or application class.
"lib_dir"
my $path = $home->lib_dir;
Path to "lib" directory of application.
"list_files"
my $files = $home->list_files;
my $files = $home->list_files('foo/bar');
Portably list all files recursively in directory relative to the home diectory.
$home->rel_file($home->list_files('templates/layouts')->[1]);
"mojo_lib_dir"
my $path = $home->mojo_lib_dir;
Path to "lib" directory in which Mojolicious is installed.
"parse"
$home = $home->parse('/home/sri/myapp');
Parse home directory.
"rel_dir"
my $path = $home->rel_dir('foo/bar');
Portably generate an absolute path for a directory relative to the home directory.
"rel_file"
my $path = $home->rel_file('foo/bar.html');
Portably generate an absolute path for a file relative to the home directory.
"slurp_rel_file"
my $string = $home->slurp_rel_file('foo/bar.html');
Portably read all data at once from file relative to the home directory.
my $content = $home->slurp_rel_file($home->list_files('public')->[1]);
"to_string"
my $string = $home->to_string;
my $string = "$home";
Home directory.
SEE ALSO
Mojolicious, Mojolicious::Guides, <http://mojolicio.us>.
perl v5.14.2 2012-09-05 Mojo::Home(3pm)
09-16-2016
.