Hi,
I want to write a shell script which increments a particular column in a row from a text file and then adds another row below the current row with the incremented value .
For Eg .
if the input file has a row :
abc xyz lmn 89 lm nk o p
I would like the script to create something like... (9 Replies)
Hi All,
The following is the scenario
id name
--------------
1 William;Johnson
2 Azim;Abdul
3 Grasim
.
.
etc....
I need the following output
id name
--------------
1 William
1 Johnson
2 Azim (2 Replies)
Hello,
I have an input file like the following:
11_3_4
2_1_35
3_15__
_16989
Where '_' is a space. The data is in a table. Is there a way for the program to prompt the user for x1,y1 and x2,y2, where x1,y1 is the desired number (for example x=6 y=4 is a value of 4) and move to a desired spot... (2 Replies)
Hi Friends,
I have a single column data like below.
1
2
3
4
5
I need the output like below.
0
1
2
3
4
where each row (including first row) subtracting from first row and the result should print below like the way shown in output file.
Thanks
Sid (11 Replies)
Hi All,
I have a requirement where I need to find sum of values from column D through O present in a CSV file and check whether the sum of each Individual column matches with the value present for that corresponding column present in the trailer record.
For example, let's assume for column D... (9 Replies)
Split column data if the table has n number of column's with some record then how to split n number of colmn's line by line with records
Table
---------
Col1 col2 col3 col4 ....................col20
1 2 3 4 .................... 20
a b c d .................... v
... (11 Replies)
I have a table with this structure:
cola colb colc
1 19 lemon
20 31 lemon
32 100 lemon
159 205 cherries
210 500 cherries
and need to parse it into this format:
cola colb colc
1 100 lemon
159 500 cherries
So I need the first row of cola and the last row of colb if colc has the... (3 Replies)
Hello,
I have some text data that is in the form of multi-line records. Each record ends with the string $$$$ and the next record starts on the next line.
RDKit 2D
15 14 0 0 0 0 0 0 0 0999 V2000
5.4596 2.1267 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 ... (5 Replies)
Discussion started by: LMHmedchem
5 Replies
LEARN ABOUT DEBIAN
afetch
afetch(1) Biosquid Manual afetch(1)NAME
afetch - retrieve an alignment from an alignment database
SYNOPSIS
afetch [options] alignmentdb key
afetch --index alignmentdb
DESCRIPTION
afetch retrieves the alignment named key from an alignment database in file alignmentdb.
alignmentdb is a "multiple multiple alignment" file in Stockholm (e.g. native Pfam) format.
key is either the name (ID) of the alignment, or its accession number (AC).
The alignmentdb file should first be SSI indexed with afetch --index for efficient retrieval. An SSI index is not required, but alignment
retrieval without one may be painfully slow.
OPTIONS -h Print brief help; includes version number and summary of all options, including expert options.
EXPERT OPTIONS --index
Instead of retrieving a key, the special command afetch --index alignmentdb produces an SSI index of the names and accessions of the
alignments in the file alignmentdb. This should be run once on the alignmentdb file to prepare it for all future afetch's.
SEE ALSO alistat(1), compalign(1), compstruct(1), revcomp(1), seqsplit(1), seqstat(1), sfetch(1), shuffle(1), sindex(1), sreformat(1), strans-
late(1), weight(1).
AUTHOR
Biosquid and its documentation are Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU
General Public License (GPL) See COPYING in the source code distribution for more details, or contact me.
Sean Eddy
HHMI/Department of Genetics
Washington University School of Medicine
4444 Forest Park Blvd., Box 8510
St Louis, MO 63108 USA
Phone: 1-314-362-7666
FAX : 1-314-362-2157
Email: eddy@genetics.wustl.edu
Biosquid 1.9g January 2003 afetch(1)