Sponsored Content
Top Forums Shell Programming and Scripting Large search replace using sed results in memory problem. Post 302962302 by RudiC on Friday 11th of December 2015 12:44:31 PM
Old 12-11-2015
Paralleling process won't help but increase memory congestion as every process will allocate own memory for the same operations.

Don't cat the big_file but have sed read the file directly - that might reduce system memory consumption for piping/buffering. And, try to split the replacefile and iterate the result of the first part_replace through the rest of the part_replaces.

Like (untested)
Code:
sed -f part_rep1 big_file | sed -f part_rep2 | sed -f part_rep3   etc.

Try this on smaller subsets of both data and script files.
This User Gave Thanks to RudiC For This Post:
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

sed search and replace

Hello Folks, Anyone know how I can replace this line in file.xml <oacore_nprocs oa_var="s_oacore_nprocs">8</oacore_nprocs> with this line <oacore_nprocs oa_var="s_oacore_nprocs">1</oacore_nprocs> using sed or awk ? Thanks for your time. Cheers, Dave (7 Replies)
Discussion started by: d__browne
7 Replies

2. UNIX for Dummies Questions & Answers

Search/Replace with Sed

Is there a way to use the sed command to 1) search a specified pattern 2) in the line where that pattern is found, replace from character N to character N+4 with a new 4-character string. Thks in advance! (5 Replies)
Discussion started by: mvalonso
5 Replies

3. Shell Programming and Scripting

Problem with sed (search/replace)

Hi, In a file FILE, the following lines appear : WORD 8 8 8 ANOTHERWORD blabla ... Directly in the prompt, if I type $sed '/WORD/s/8/10/g' FILE it replace the 8's by 10's in file : $cat FILE WORD 10 10 10 ANOTHERWORD blabla ... (9 Replies)
Discussion started by: tipi
9 Replies

4. UNIX and Linux Applications

GNU sed - Search and Replace problem

Hi, The following code loops through every file with an error extension and then loops through all XML files in that directory and replaces the target character @ with / . The problem I have is that if there is more than one occurance of @ in each individual file it doesn't replace it. Any... (2 Replies)
Discussion started by: Fishn
2 Replies

5. Shell Programming and Scripting

sed search and replace

hi, im new for sed, anyone can help me to these in sed command my output file.txt "aaa",a1,bbb "ddd",a1,ccc "eee",a1,www need to change a1, to "a1"," output i need "aaa","a1","bbb "ddd","a1","ccc "eee","a1","www thanks in advance fsp (2 Replies)
Discussion started by: fspalero
2 Replies

6. UNIX for Advanced & Expert Users

Out of Memory error when free memory size is large

I was running a program and it stopped and showed "Out of Memory!". at that time, the RAM used by this process is around 4G and the free memory size of the machine is around 30G. Does anybody know what maybe the reason? this program is written with Perl. the OS of the machine is Solaris U8. And I... (1 Reply)
Discussion started by: lilili07
1 Replies

7. Shell Programming and Scripting

highly specific search and replace for a large number of files

hey guys, I have a directory with about 600 files. I need to find a specific word inside a command and replace only that instance of the word in many files. For example, lets say I have a command called 'foo' in many files. One of the input arguments of the 'foo' call is 'bar'. The word 'bar'... (5 Replies)
Discussion started by: ksubrama
5 Replies

8. UNIX for Dummies Questions & Answers

How to use 'sed' to search and replace?

Hello - I have a very large file in which a certain numbers are repeated. I find that using vi to edit the entire file is useless. How should i use sed to find a replace such as this text: To replace: 145.D25.D558 With: 215.22.45.DW I tried this command: sed... (4 Replies)
Discussion started by: DallasT
4 Replies

9. Shell Programming and Scripting

Can ctag and cscope support recording search results and displaying the history results ?

Hello , When using vim, can ctag and cscope support recording search results and displaying the history results ? Once I jump to one tag, I can use :tnext to jump to next tag, but how can I display the preview search result? (0 Replies)
Discussion started by: 915086731
0 Replies

10. Shell Programming and Scripting

sed Unexpected results, missing first search item

I created 3 files with the identical data as follows dial-peer voice 9999 pots trunkgroup CO list outgoing Local translation-profile outgoing LOCAL-7-DIGITS-NO-PREPEND-97 preference 2 shutdown destination-pattern 9......$ forward-digits 7 dial-peer voice 10000 pots ... (6 Replies)
Discussion started by: popeye
6 Replies
SED(1)								   User Commands							    SED(1)

NAME
sed - stream editor for filtering and transforming text SYNOPSIS
sed [OPTION]... {script-only-if-no-other-script} [input-file]... DESCRIPTION
Sed is a stream editor. A stream editor is used to perform basic text transformations on an input stream (a file or input from a pipe- line). While in some ways similar to an editor which permits scripted edits (such as ed), sed works by making only one pass over the input(s), and is consequently more efficient. But it is sed's ability to filter text in a pipeline which particularly distinguishes it from other types of editors. -n, --quiet, --silent suppress automatic printing of pattern space -e script, --expression=script add the script to the commands to be executed -f script-file, --file=script-file add the contents of script-file to the commands to be executed --follow-symlinks follow symlinks when processing in place -i[SUFFIX], --in-place[=SUFFIX] edit files in place (makes backup if extension supplied) -l N, --line-length=N specify the desired line-wrap length for the `l' command --posix disable all GNU extensions. -r, --regexp-extended use extended regular expressions in the script. -s, --separate consider files as separate rather than as a single continuous long stream. -u, --unbuffered load minimal amounts of data from the input files and flush the output buffers more often --help display this help and exit --version output version information and exit If no -e, --expression, -f, or --file option is given, then the first non-option argument is taken as the sed script to interpret. All remaining arguments are names of input files; if no input files are specified, then the standard input is read. GNU sed home page: <http://www.gnu.org/software/sed/>. General help using GNU software: <http://www.gnu.org/gethelp/>. E-mail bug reports to: <bug-gnu-utils@gnu.org>. Be sure to include the word ``sed'' somewhere in the ``Subject:'' field. COMMAND SYNOPSIS
This is just a brief synopsis of sed commands to serve as a reminder to those who already know sed; other documentation (such as the tex- info document) must be consulted for fuller descriptions. Zero-address ``commands'' : label Label for b and t commands. #comment The comment extends until the next newline (or the end of a -e script fragment). } The closing bracket of a { } block. Zero- or One- address commands = Print the current line number. a text Append text, which has each embedded newline preceded by a backslash. i text Insert text, which has each embedded newline preceded by a backslash. q [exit-code] Immediately quit the sed script without processing any more input, except that if auto-print is not disabled the current pattern space will be printed. The exit code argument is a GNU extension. Q [exit-code] Immediately quit the sed script without processing any more input. This is a GNU extension. r filename Append text read from filename. R filename Append a line read from filename. Each invocation of the command reads a line from the file. This is a GNU extension. Commands which accept address ranges { Begin a block of commands (end with a }). b label Branch to label; if label is omitted, branch to end of script. c text Replace the selected lines with text, which has each embedded newline preceded by a backslash. d Delete pattern space. Start next cycle. D Delete up to the first embedded newline in the pattern space. Start next cycle, but skip reading from the input if there is still data in the pattern space. h H Copy/append pattern space to hold space. g G Copy/append hold space to pattern space. l List out the current line in a ``visually unambiguous'' form. l width List out the current line in a ``visually unambiguous'' form, breaking it at width characters. This is a GNU extension. n N Read/append the next line of input into the pattern space. p Print the current pattern space. P Print up to the first embedded newline of the current pattern space. s/regexp/replacement/ Attempt to match regexp against the pattern space. If successful, replace that portion matched with replacement. The replacement may contain the special character & to refer to that portion of the pattern space which matched, and the special escapes 1 through 9 to refer to the corresponding matching sub-expressions in the regexp. t label If a s/// has done a successful substitution since the last input line was read and since the last t or T command, then branch to label; if label is omitted, branch to end of script. T label If no s/// has done a successful substitution since the last input line was read and since the last t or T command, then branch to label; if label is omitted, branch to end of script. This is a GNU extension. w filename Write the current pattern space to filename. W filename Write the first line of the current pattern space to filename. This is a GNU extension. x Exchange the contents of the hold and pattern spaces. y/source/dest/ Transliterate the characters in the pattern space which appear in source to the corresponding character in dest. Addresses Sed commands can be given with no addresses, in which case the command will be executed for all input lines; with one address, in which case the command will only be executed for input lines which match that address; or with two addresses, in which case the command will be executed for all input lines which match the inclusive range of lines starting from the first address and continuing to the second address. Three things to note about address ranges: the syntax is addr1,addr2 (i.e., the addresses are separated by a comma); the line which addr1 matched will always be accepted, even if addr2 selects an earlier line; and if addr2 is a regexp, it will not be tested against the line that addr1 matched. After the address (or address-range), and before the command, a ! may be inserted, which specifies that the command shall only be executed if the address (or address-range) does not match. The following address types are supported: number Match only the specified line number. first~step Match every step'th line starting with line first. For example, ``sed -n 1~2p'' will print all the odd-numbered lines in the input stream, and the address 2~5 will match every fifth line, starting with the second. first can be zero; in this case, sed operates as if it were equal to step. (This is an extension.) $ Match the last line. /regexp/ Match lines matching the regular expression regexp. cregexpc Match lines matching the regular expression regexp. The c may be any character. GNU sed also supports some special 2-address forms: 0,addr2 Start out in "matched first address" state, until addr2 is found. This is similar to 1,addr2, except that if addr2 matches the very first line of input the 0,addr2 form will be at the end of its range, whereas the 1,addr2 form will still be at the beginning of its range. This works only when addr2 is a regular expression. addr1,+N Will match addr1 and the N lines following addr1. addr1,~N Will match addr1 and the lines following addr1 until the next line whose input line number is a multiple of N. REGULAR EXPRESSIONS
POSIX.2 BREs should be supported, but they aren't completely because of performance problems. The sequence in a regular expression matches the newline character, and similarly for a, , and other sequences. BUGS
E-mail bug reports to bonzini@gnu.org. Be sure to include the word ``sed'' somewhere in the ``Subject:'' field. Also, please include the output of ``sed --version'' in the body of your report if at all possible. COPYRIGHT
Copyright (C) 2009 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICU- LAR PURPOSE, to the extent permitted by law. GNU sed home page: <http://www.gnu.org/software/sed/>. General help using GNU software: <http://www.gnu.org/gethelp/>. E-mail bug reports to: <bug-gnu-utils@gnu.org>. Be sure to include the word ``sed'' somewhere in the ``Subject:'' field. SEE ALSO
awk(1), ed(1), grep(1), tr(1), perlre(1), sed.info, any of various books on sed, the sed FAQ (http://sed.sf.net/grabbag/tutorials/sed- faq.txt), http://sed.sf.net/grabbag/. The full documentation for sed is maintained as a Texinfo manual. If the info and sed programs are properly installed at your site, the command info sed should give you access to the complete manual. sed 4.2.1 December 2010 SED(1)
All times are GMT -4. The time now is 02:59 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy