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Full Discussion: Uniq count second column
Top Forums Shell Programming and Scripting Uniq count second column Post 302939150 by RudiC on Monday 23rd of March 2015 08:13:31 AM
Old 03-23-2015
uniq needs sorted input. man uniq:
Quote:
Note: 'uniq' does not detect repeated lines unless they are adjacent. You may want to sort the input first, or use 'sort -u' without 'uniq'.
Unfortunately, your sample has only unique second fields so it can't be tested against. Adding a few non-unique lines, this may lead to the desired result:
Code:
sort -k2 file | uniq -cf1
      1 ERR315389.1000637       GCTGGTGTCACTGCAAAAGAAACTCAAGGGCACCGAAGATGAACTGG. . .
      7 ERR315389.1000504       GGTCATCATTGAGAGCGACCTGGAACGTGCAGAGGAGCGGGCTGAGC. . .

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uniq(1) 						      General Commands Manual							   uniq(1)

Name
       uniq - report repeated lines in a file

Syntax
       uniq [-udc[+n][-n]] [input[output]]

Description
       The  command  reads  the  input	file comparing adjacent lines.	In the normal case, the second and succeeding copies of repeated lines are
       removed; the remainder is written on the output file.  Note that repeated lines must be adjacent in order to be found.  For further  infor-
       mation, see

Options
       The n arguments specify skipping an initial portion of each line in the comparison:

       -n Skips specified number of fields.  A field is defined as a string of non-space, non-tab characters separated by tabs and spaces from its
	  neighbors.

       +n Skips specified number of characters in addition to fields.  Fields are skipped before characters.

       -c Displays number of repetitions, if any, for each line.

       -d Displays only lines that were repeated.

       -u Displays only unique (nonrepeated) lines.

       If the -u flag is used, just the lines that are not repeated in the original file are output.  The -d option specifies  that  one  copy	of
       just the repeated lines is to be written.  The normal mode output is the union of the -u and -d mode outputs.

       The  -c option supersedes -u and -d and generates an output report in default style but with each line preceded by a count of the number of
       times it occurred.

See Also
       comm(1), sort(1)

																	   uniq(1)
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