03-18-2015
Output for matching questions
Hi, I have two files A and B.
file_A
Code :
gga-mir-181b-1
gga-mir-181b-2
gga-mir-199-1
gga-mir-203
gga-mir-204-1
gga-mir-205a
gga-mir-206
gga-mir-214
gga-mir-218-1
gga-mir-365-2
gga-mir-454
gga-mir-551
gga-mir-1464
gga-mir-1465
gga-mir-1466
gga-mir-1553
gga-mir-15c
gga-mir-16c
gga-mir-1577
gga-mir-1578
gga-mir-1582
gga-mir-1608
gga-mir-1617
gga-mir-1639
gga-mir-1644
gga-mir-1645
gga-mir-1653
gga-mir-1665
gga-let-7a-3
gga-mir-21
gga-mir-22
gga-mir-1677
gga-mir-1697
gga-mir-1700
gga-mir-1704
gga-mir-1713
gga-mir-1714
gga-mir-1723
gga-mir-1725
gga-mir-1727
gga-mir-1733
gga-mir-1753
gga-let-7b
gga-mir-24
gga-mir-27b
gga-mir-30a
gga-mir-30b
gga-mir-1780
gga-mir-1783
gga-mir-1787
gga-mir-1788
gga-mir-1806
gga-mir-2126
gga-mir-3526
gga-mir-3533
gga-mir-3540
gga-mir-6516
gga-mir-6553
gga-mir-6559
gga-mir-30e
gga-mir-32
gga-mir-6574
gga-mir-6576
gga-mir-6581
gga-mir-6610
gga-mir-6613
gga-mir-6631
gga-mir-6647
gga-mir-6663
gga-mir-6667
gga-mir-6675
gga-mir-6697
gga-mir-124c
gga-mir-147
gga-mir-181b-1
gga-mir-199-1
gga-mir-218-1
gga-mir-365-2
gga-mir-454
gga-mir-551
gga-mir-1553
gga-mir-15c
gga-mir-16c
gga-let-7a-3
gga-mir-21
gga-mir-22
gga-mir-1677
gga-mir-24
gga-mir-27b
gga-mir-30a
gga-mir-30b
gga-mir-1788
gga-mir-6516
gga-mir-6553
gga-mir-6559
gga-mir-30e
gga-mir-32
gga-mir-6574
gga-mir-6576
gga-mir-6581
gga-mir-6675
gga-mir-124c
file_B
Code :
gga-mir-6708 chr1 290088 290197
gga-mir-1604 chr1 314579 314675
gga-mir-1651 chr1 505088 505171
gga-mir-183 chr1 796221 796318
gga-mir-6676 chr1 858538 858647
gga-mir-6629 chr1 868652 868761
gga-mir-205b chr1 1223722 1223819
gga-mir-6659 chr1 1678308 1678417
gga-mir-6621 chr1 2622379 2622488
gga-mir-29b-1 chr1 3328673 3328753
gga-mir-29a chr1 3329690 3329778
gga-mir-1626 chr1 5558265 5558354
gga-mir-1596 chr1 5678879 5678968
gga-mir-1460 chr1 6824865 6824963
gga-mir-2126 chr1 14567820 14567965
gga-mir-1693 chr1 20342133 20342234
gga-mir-1645 chr1 23147247 23147310
gga-mir-1695 chr1 26663517 26663595
gga-mir-7447 chr1 29560368 29560429
gga-let-7i chr1 33019229 33019312
gga-mir-1691 chr1 46087390 46087480
gga-mir-135a-2 chr1 46153508 46153607
gga-mir-6581 chr1 48223222 48223323
gga-mir-1581 chr1 49133041 49133126
gga-mir-33-1 chr1 49353559 49353627
gga-mir-1683 chr1 49748062 49748162
gga-mir-3538 chr1 50552408 50552482
gga-mir-1742 chr1 51573092 51573174
gga-mir-7450 chr1 54894245 54894298
gga-mir-490 chr1 58018957 58019049
gga-mir-6700 chr1 59483131 59483239
gga-mir-1593 chr1 59704345 59704434
gga-mir-6608-1 chr1 65986597 65986706
gga-mir-6608-2 chr1 65992614 65992723
gga-mir-7451 chr1 67305764 67305818
gga-let-7a-3 chr1 71371150 71371225
gga-let-7b chr1 71371979 71372063
gga-mir-1727 chr1 71640474 71640579
gga-mir-6606 chr1 75871760 75871869
gga-mir-6553 chr1 76381420 76381519
gga-mir-6609 chr1 79371004 79371113
gga-mir-3539 chr1 80199429 80199499
gga-mir-1690 chr1 83233227 83233330
gga-mir-7446 chr1 87937436 87937498
gga-mir-6616 chr1 91716451 91716560
gga-mir-1806 chr1 93185199 93185283
gga-mir-99a chr1 98347473 98347553
gga-let-7c chr1 98348226 98348309
gga-mir-125b-2 chr1 98380668 98380757
gga-mir-155 chr1 101820932 101820994
gga-mir-1738 chr1 104085133 104085223
gga-mir-3524a chr1 105212787 105212902
gga-mir-3525 chr1 105212803 105212886
gga-mir-7452 chr1 105985416 105985483
gga-mir-222a chr1 109977177 109977274
gga-mir-221 chr1 109977681 109977779
gga-mir-6672 chr1 111965213 111965322
gga-mir-7448 chr1 125477797 125477853
gga-mir-1397 chr1 126318826 126318930
gga-mir-1805 chr1 130382447 130382530
gga-mir-6559 chr1 132416104 132416212
gga-mir-1656 chr1 132938805 132938870
gga-mir-1700 chr1 136086269 136086368
gga-mir-1736 chr1 138533094 138533192
gga-mir-1632 chr1 139187329 139187419
gga-mir-1555 chr1 144185923 144186008
gga-mir-92-1 chr1 147253128 147253205
gga-mir-19b chr1 147253241 147253327
gga-mir-20a chr1 147253364 147253461
gga-mir-19a chr1 147253550 147253630
gga-mir-18a chr1 147253684 147253776
gga-mir-17 chr1 147253839 147253923
gga-mir-1743 chr1 155877449 155877551
gga-mir-7445-2 chr1 160939457 160939516
gga-mir-7445-1 chr1 160939459 160939518
gga-mir-2127 chr1 165191206 165191309
gga-mir-6555 chr1 166351480 166351579
gga-mir-16-1 chr1 168694548 168694631
gga-mir-15a chr1 168694690 168694772
gga-mir-1646 chr1 174458049 174458142
gga-mir-6656 chr1 175178559 175178668
gga-mir-6641 chr1 178435317 178435420
gga-mir-1709 chr1 180222477 180222558
gga-mir-7449 chr1 181580126 181580193
gga-mir-6570 chr1 184262390 184262489
gga-mir-1657 chr1 187518611 187518704
gga-mir-1664 chr1 189303425 189303521
gga-mir-1600 chr1 193524356 193524435
gga-mir-1708 chr1 194414383 194414476
gga-mir-1670 chr10 360172 360231
gga-mir-6692 chr10 699613 699722
gga-mir-1688 chr10 869890 869960
gga-mir-6660 chr10 1076742 1076851
gga-mir-1623 chr10 1515862 1515957
gga-mir-6625 chr10 1882076 1882185
gga-mir-2128 chr10 1900845 1900908
gga-mir-6703 chr10 2016309 2016418
gga-mir-1794 chr10 2048859 2048956
gga-mir-6575 chr10 2190021 2190128
gga-mir-190a chr10 3767388 3767472
gga-mir-1574 chr10 5189799 5189872
gga-mir-204-2 chr10 5190072 5190172
gga-mir-1744 chr10 9412311 9412399
gga-mir-147 chr10 10170161 10170230
gga-mir-6596 chr10 10272568 10272661
gga-mir-3540 chr10 10562408 10562469
gga-mir-1720 chr10 12627132 12627196
gga-mir-7-2 chr10 12627267 12627365
gga-mir-3529 chr10 12627271 12627361
gga-mir-1611 chr10 14127514 14127595
gga-mir-1680 chr10 15365468 15365556
gga-mir-1813-2 chr10 16080572 16080645
gga-mir-1737 chr10 16575378 16575470
gga-mir-1722 chr10 17345594 17345685
gga-mir-1642 chr10 18561845 18561918
gga-mir-6550 chr10 18644669 18644768
gga-mir-184 chr10 19462850 19462923
gga-mir-6709 chr11 567609 567718
gga-mir-1616 chr11 1261870 1261963
gga-mir-1643 chr11 1933494 1933588
gga-mir-138-2 chr11 2036243 2036325
gga-mir-1789 chr11 8363039 8363101
gga-mir-1791 chr11 8443431 8443515
gga-mir-6589 chr11 10563109 10563218
gga-mir-1634-1 chr11 10799331 10799426
gga-mir-6595 chr11 12754009 12754118
gga-mir-1571 chr11 17862696 17862793
gga-mir-1560 chr11 18095261 18095364
gga-mir-1785 chr11 18154149 18154250
gga-mir-6667 chr11 18210719 18210828
gga-mir-140 chr11 18514128 18514222
gga-mir-1699 chr11 18933029 18933125
gga-mir-1563 chr12 733993 734063
gga-mir-1719 chr12 835709 835797
gga-mir-1678 chr12 2560848 2560933
gga-let-7g chr12 2982077 2982159
gga-mir-135a-1 chr12 3003740 3003827
gga-let-7d chr12 6076930 6077032
gga-let-7f chr12 6077975 6078061
gga-let-7a-1 chr12 6078389 6078478
gga-mir-1787 chr12 8747037 8747126
gga-mir-1783 chr12 8795545 8795645
gga-mir-1572 chr12 9401983 9402077
gga-mir-1731 chr12 10637850 10637951
gga-mir-6684 chr12 11072268 11072377
gga-mir-1550 chr12 12834954 12835051
gga-mir-1711 chr12 16392265 16392332
gga-mir-1702 chr13 1448162 1448245
gga-mir-218-2 chr13 3934522 3934616
gga-mir-103-1 chr13 4060404 4060481
gga-mir-6569 chr13 4071149 4071252
gga-mir-146a chr13 7137989 7138087
gga-mir-458a chr13 7575893 7576008
gga-mir-458b chr13 7575899 7576000
gga-mir-6652 chr13 8253534 8253643
gga-mir-3523 chr13 8384599 8384764
gga-mir-7460 chr13 9695805 9695865
gga-mir-1778 chr13 11461782 11461854
gga-mir-1609 chr13 16166965 16167058
gga-mir-6588 chr13 16922251 16922360
gga-mir-1576 chr13 17396211 17396305
gga-mir-6686 chr14 757680 757789
gga-mir-193b chr14 762081 762163
gga-mir-365b chr14 766887 766996
gga-mir-365-1 chr14 766899 766983
gga-mir-1781 chr14 3316667 3316759
gga-mir-2129 chr14 3998884 3998967
gga-mir-3533 chr14 4170287 4170370
gga-mir-1682 chr14 4912472 4912544
gga-mir-1551 chr14 5206161 5206250
gga-mir-1554 chr14 5786820 5786898
gga-mir-1615 chr14 6697962 6698054
gga-mir-6548 chr14 7275795 7275901
gga-mir-1786 chr14 7716086 7716194
gga-mir-1644 chr14 8124516 8124601
gga-mir-1763 chr14 12262850 12262915
gga-mir-1564 chr14 12263702 12263772
gga-mir-6714 chr14 12388339 12388448
gga-mir-6643 chr14 13143450 13143559
gga-mir-1588 chr14 14125510 14125611
gga-mir-1715 chr14 14285835 14285936
gga-mir-7471 chr14 14312407 14312466
gga-mir-130b chr15 390543 390619
gga-mir-454 chr15 391656 391776
gga-mir-301a chr15 398134 398226
gga-mir-130a chr15 399359 399441
gga-mir-1673 chr15 741749 741848
gga-mir-1729 chr15 754851 754921
gga-mir-1306 chr15 1279112 1279180
gga-mir-1769 chr15 2225214 2225316
gga-mir-1636 chr15 4688786 4688873
gga-mir-7476 chr15 4975672 4975734
gga-mir-1671 chr15 5044461 5044520
gga-mir-762 chr15 5706075 5706153
gga-mir-1764 chr15 5778571 5778673
gga-mir-6648-1 chr15 6645228 6645326
gga-mir-6635-1 chr15 6927885 6927994
gga-mir-1625 chr15 7568815 7568894
gga-mir-6650 chr15 7683164 7683273
gga-mir-6673 chr15 8860990 8861099
gga-mir-1640 chr15 9973454 9973544
gga-mir-1464 chr15 11434695 11434804
gga-mir-1707 chr17 1824191 1824286
gga-mir-7441 chr17 2068080 2068142
gga-mir-7442 chr17 2440746 2440803
gga-mir-6696 chr17 4690776 4690878
gga-mir-455 chr17 4701970 4702055
gga-mir-219b chr17 4948485 4948573
gga-mir-219a chr17 4948488 4948572
gga-mir-199-1 chr17 5034551 5034644
gga-mir-1753 chr17 5958864 5958942
gga-mir-3528 chr17 7723310 7723406
gga-mir-126 chr17 7748465 7748548
gga-mir-1465 chr17 8168589 8168698
gga-mir-1705 chr17 8801359 8801448
gga-mir-181a-2 chr17 9496903 9496993
gga-mir-181b-2 chr17 9498543 9498627
gga-mir-6712 chr17 9515769 9515878
gga-mir-1748 chr18 761046 761126
gga-mir-6516 chr18 4105545 4105654
gga-mir-6599 chr18 5018210 5018306
gga-mir-1765 chr18 5811211 5811315
gga-mir-1561 chr18 6381008 6381092
gga-mir-365-2 chr18 6405040 6405135
gga-mir-3064 chr18 6861731 6861854
gga-mir-1672 chr18 9054663 9054738
gga-mir-6551 chr18 9590168 9590275
gga-mir-1652 chr18 9906187 9906282
gga-mir-7443 chr18 10001789 10001847
gga-mir-1637 chr18 10532541 10532605
gga-mir-1580 chr18 10864474 10864546
gga-mir-142 chr19 491906 491993
gga-mir-1698-1 chr19 622426 622532
gga-mir-1698-2 chr19 687031 687137
gga-mir-1567 chr19 1728894 1728982
gga-mir-1354 chr19 1813848 1813923
gga-mir-1587 chr19 1820497 1820592
gga-mir-7444 chr19 2941353 2941415
gga-mir-6592 chr19 3209216 3209325
gga-mir-6585 chr19 5052627 5052736
gga-mir-22 chr19 5377511 5377610
gga-mir-1666 chr19 5562187 5562276
gga-mir-1696 chr19 5600965 5601034
gga-mir-451 chr19 5862879 5862947
gga-mir-144 chr19 5863034 5863118
gga-mir-301b chr19 7193224 7193313
gga-mir-130c chr19 7193512 7193605
gga-mir-1697 chr19 7241334 7241412
gga-mir-21 chr19 7367265 7367361
gga-mir-6639 chr19 8674403 8674512
gga-mir-1585 chr19 8834278 8834368
gga-mir-1592 chr19 9367029 9367095
gga-mir-1689 chr19 9390741 9390844
gga-mir-1749 chr2 569326 569423
gga-mir-6710 chr2 724388 724497
gga-mir-7461 chr2 966581 966667
gga-mir-1662 chr2 1818925 1818997
gga-mir-6713 chr2 2482608 2482717
gga-mir-1639 chr2 3254985 3255056
gga-mir-460a chr2 3654245 3654334
gga-mir-1706 chr2 3818009 3818082
gga-mir-26a chr2 4537766 4537842
gga-mir-6610 chr2 4874819 4874928
gga-mir-6600 chr2 5790773 5790882
gga-mir-6554 chr2 6741175 6741280
gga-mir-153 chr2 8813789 8813875
gga-mir-6628 chr2 12060312 12060421
gga-mir-1768 chr2 14062311 14062387
gga-mir-1661 chr2 19683389 19683449
gga-mir-466 chr2 21607538 21607606
gga-mir-1650 chr2 22840865 22840957
gga-mir-489 chr2 23246915 23246998
gga-mir-6601 chr2 24012383 24012492
gga-mir-1685 chr2 24912242 24912336
gga-mir-148a chr2 32253587 32253654
gga-mir-1732-1 chr2 32863481 32863581
gga-mir-196-2 chr2 32864663 32864756
gga-mir-1732-2 chr2 32976244 32976344
gga-mir-196-4 chr2 32977426 32977519
gga-mir-1732-3 chr2 33157015 33157115
gga-mir-196-5 chr2 33158197 33158290
gga-mir-1622 chr2 40788808 40788904
gga-mir-138-1 chr2 41316138 41316233
gga-mir-1723 chr2 41948661 41948766
gga-mir-7457 chr2 44567065 44567118
gga-mir-1607 chr2 46000263 46000341
gga-mir-128-2 chr2 46095826 46095909
gga-mir-7458-1 chr2 56301149 56301212
gga-mir-7459 chr2 57829998 57830065
gga-mir-6557 chr2 61149125 61149230
gga-mir-1747 chr2 61712114 61712190
gga-mir-1759 chr2 62610756 62610830
gga-mir-6571 chr2 64452318 64452423
gga-mir-6698 chr2 67878128 67878237
gga-mir-1782 chr2 68575039 68575137
gga-mir-6545 chr2 71697392 71697498
gga-mir-1766 chr2 75609268 75609360
gga-mir-757 chr2 76426270 76426351
gga-mir-1613 chr2 77808828 77808904
gga-mir-187 chr2 83630901 83630986
gga-mir-32 chr2 84239873 84239942
gga-mir-1816 chr2 88290498 88290602
gga-mir-1803 chr2 92563597 92563685
gga-mir-6584 chr2 93544765 93544874
gga-mir-1681 chr2 93973210 93973309
gga-mir-3524b chr2 95601105 95601214
gga-mir-6701 chr2 97173132 97173241
gga-mir-133a-1 chr2 102176853 102176939
gga-mir-1a-2 chr2 102179979 102180063
gga-mir-1597 chr2 103453436 103453508
gga-mir-6707 chr2 106512944 106513053
gga-mir-1557 chr2 112605422 112605491
gga-mir-124c chr2 114001455 114001555
gga-mir-124a chr2 114001462 114001557
gga-mir-1714 chr2 114004468 114004543
gga-mir-7456 chr2 114763688 114763745
gga-mir-1569 chr2 116341906 116341975
gga-mir-1796 chr2 117163520 117163589
gga-mir-6630 chr2 128704144 128704253
gga-mir-1813-1 chr2 130687107 130687192
gga-mir-1467-1 chr2 135124476 135124585
gga-mir-1467-2 chr2 135256279 135256388
gga-mir-1457 chr2 136647985 136648071
gga-mir-30b chr2 142225959 142226045
gga-mir-30d chr2 142229501 142229564
gga-mir-6572 chr2 145236906 145237013
gga-mir-1770 chr2 145493414 145493510
gga-mir-6664 chr20 606662 606771
gga-mir-1558 chr20 968247 968331
gga-mir-1453 chr20 1654250 1654323
gga-mir-7453 chr20 2310038 2310101
gga-mir-6674 chr20 2467054 2467163
gga-mir-499 chr20 2955127 2955217
gga-mir-1614 chr20 5286402 5286483
gga-mir-1a-1 chr20 8472265 8472335
gga-mir-1773 chr20 8473570 8473647
gga-mir-133a-2 chr20 8483487 8483582
gga-mir-6681 chr20 8762829 8762938
gga-mir-6567 chr20 8789276 8789382
gga-mir-1746 chr20 8991446 8991545
gga-mir-124a-2 chr20 9040251 9040348
gga-mir-1798 chr20 10028660 10028755
gga-mir-6597 chr20 11240167 11240276
gga-mir-6564 chr20 11288976 11289073
gga-mir-1619 chr20 12990348 12990439
gga-mir-6677 chr20 13420930 13421038
gga-mir-1687 chr20 13423654 13423744
gga-mir-1648 chr20 14163574 14163659
gga-mir-1635 chr21 1741924 1742030
gga-mir-1795 chr21 2375601 2375678
gga-mir-429 chr21 2595422 2595505
gga-mir-200a chr21 2597927 2598013
gga-mir-200b chr21 2600252 2600336
gga-mir-6680 chr21 2638678 2638787
gga-mir-34a chr21 3266632 3266740
gga-mir-6626 chr21 4626828 4626937
gga-mir-6576 chr22 52491 52596
gga-mir-2188 chr22 2634242 2634410
gga-mir-3531 chr23 440597 440683
gga-mir-124b chr23 2183626 2183718
gga-mir-1724 chr23 2718664 2718765
gga-mir-1b chr23 4294312 4294375
gga-mir-133c chr23 4294451 4294529
gga-mir-30e chr23 4883379 4883474
gga-mir-30c-1 chr23 4884602 4884690
gga-mir-1780 chr23 5024764 5024839
gga-mir-6637-1 chr23 5162447 5162556
gga-mir-6637-2 chr23 5169903 5170012
gga-mir-1758 chr24 25065 25135
gga-mir-1601 chr24 2010029 2010105
gga-mir-1807 chr24 3166329 3166418
gga-mir-100 chr24 3330837 3330916
gga-mir-6675 chr24 3337464 3337572
gga-let-7a-2 chr24 3338936 3339007
gga-mir-1466 chr24 4170955 4171064
gga-mir-6612 chr24 4779927 4780036
gga-mir-6671 chr24 5035783 5035892
gga-mir-1745 chr24 5163387 5163473
gga-mir-1667 chr24 5314667 5314753
gga-mir-34b chr24 5562070 5562153
gga-mir-34c chr24 5562807 5562880
gga-mir-6662 chr25 648172 648281
gga-mir-3536 chr25 1309436 1309513
gga-mir-1629 chr25 1381572 1381664
gga-mir-1752 chr25 1457611 1457692
gga-mir-6646-1 chr25 1588340 1588449
gga-mir-6620 chr25 2097073 2097182
gga-mir-6607 chr26 675737 675846
gga-let-7j chr26 1591918 1592000
gga-let-7k chr26 1592118 1592200
gga-mir-6618 chr26 1713408 1713517
gga-mir-135a-3 chr26 2065494 2065589
gga-mir-1797 chr26 2220800 2220900
gga-mir-6602 chr26 2228959 2229068
gga-mir-29c chr26 2640705 2640793
gga-mir-29b-2 chr26 2641616 2641695
gga-mir-6654 chr26 2795073 2795182
gga-mir-205a chr26 3017914 3018009
gga-mir-1669 chr26 3568060 3568150
gga-mir-7454 chr26 5304485 5304538
gga-mir-6644-2 chr27 380937 381046
gga-mir-6644-1 chr27 389178 389287
gga-mir-6695 chr27 1155019 1155128
gga-mir-6573 chr27 1532553 1532671
gga-mir-196-1 chr27 3561326 3561420
gga-mir-10a chr27 3620210 3620283
gga-mir-6663 chr27 3965608 3965717
gga-mir-1735 chr27 3990639 3990717
gga-mir-6547 chr27 4244999 4245118
gga-mir-1774 chr28 1299723 1299801
gga-mir-1434 chr28 1442291 1442367
gga-mir-6615 chr28 1748828 1748938
gga-mir-211 chr28 2175845 2175918
gga-mir-1647 chr28 2209424 2209530
gga-mir-1777 chr28 3115010 3115104
gga-mir-1621 chr28 3375877 3375947
gga-mir-1565 chr28 3377144 3377225
gga-mir-9-1 chr28 3378847 3378934
gga-mir-6693 chr28 4049943 4050052
gga-mir-6666 chr28 4471108 4471217
gga-mir-7-3 chr28 4641011 4641105
gga-mir-217 chr3 298909 299015
gga-mir-216a chr3 301577 301682
gga-mir-216b chr3 306984 307072
gga-mir-216c chr3 306986 307071
gga-mir-6583 chr3 737586 737695
gga-mir-7463 chr3 1020676 1020737
gga-mir-1740 chr3 3722992 3723093
gga-mir-6542 chr3 4348122 4348248
gga-mir-1792 chr3 7694748 7694846
gga-mir-6711 chr3 9944719 9944828
gga-mir-6631 chr3 11871358 11871467
gga-mir-1641 chr3 12620456 12620550
gga-mir-1756b chr3 14028997 14029085
gga-mir-3526 chr3 14930762 14930876
gga-mir-6563 chr3 15722961 15723070
gga-mir-7464 chr3 16228319 16228375
gga-mir-194 chr3 18143383 18143457
gga-mir-215 chr3 18143689 18143793
gga-mir-1649 chr3 21194285 21194382
gga-mir-6640 chr3 21535494 21535603
gga-mir-1598 chr3 22197514 22197588
gga-mir-6580 chr3 26665020 26665124
gga-mir-4732 chr3 29704335 29704444
gga-mir-456 chr3 30789064 30789175
gga-mir-1717 chr3 33118442 33118542
gga-mir-1784 chr3 34968393 34968495
gga-mir-135b chr3 36785160 36785226
gga-mir-1767 chr3 42165536 42165594
gga-mir-1734 chr3 45520635 45520718
gga-mir-7462 chr3 53417540 53417600
gga-mir-6568 chr3 54480212 54480309
gga-mir-1454 chr3 56049382 56049481
gga-mir-6582 chr3 56764245 56764349
gga-mir-6697 chr3 57518333 57518442
gga-mir-1660 chr3 57720708 57720761
gga-mir-199b chr3 62411976 62412041
gga-mir-6699 chr3 66859781 66859890
gga-mir-1677 chr3 73379297 73379369
gga-mir-1686 chr3 74983393 74983490
gga-mir-1451 chr3 75401219 75401328
gga-mir-1712 chr3 78631047 78631119
gga-mir-6670 chr3 79001169 79001278
gga-mir-6633 chr3 79616869 79616978
gga-mir-6687 chr3 80912033 80912142
gga-mir-7465 chr3 80973307 80973359
gga-mir-30a chr3 81754485 81754556
gga-mir-30c-2 chr3 81779099 81779170
gga-mir-6605 chr3 83660653 83660762
gga-mir-6634 chr3 89124219 89124328
gga-mir-6655 chr3 96307259 96307368
gga-mir-1329 chr3 96487080 96487174
gga-mir-6678 chr3 102374181 102374290
gga-mir-6578 chr3 104615495 104615596
gga-mir-6690 chr3 107000658 107000767
gga-mir-6702 chr3 107007864 107007973
gga-mir-133b chr3 107209163 107209246
gga-mir-206 chr3 107213960 107214035
gga-mir-223 chr4 242669 242768
gga-mir-6594 chr4 574788 574897
gga-mir-6658 chr4 1174077 1174186
gga-mir-1586 chr4 1223651 1223747
gga-mir-1628 chr4 1894848 1894944
gga-mir-222b chr4 2147533 2147643
gga-mir-460b chr4 2677836 2677925
gga-mir-6689 chr4 3199902 3200011
gga-mir-20b chr4 3946318 3946402
gga-mir-18b chr4 3946499 3946582
gga-mir-106 chr4 3946630 3946710
gga-mir-16c chr4 4023458 4023528
gga-mir-15c chr4 4023824 4023899
gga-mir-1462 chr4 8488386 8488495
gga-mir-6704 chr4 8620570 8620679
gga-mir-1750 chr4 10531500 10531584
gga-mir-1728 chr4 10910465 10910560
gga-mir-1790 chr4 11534471 11534575
gga-mir-1573 chr4 12427324 12427396
gga-mir-1606 chr4 13396908 13396976
gga-mir-6614 chr4 13721888 13721997
gga-mir-6679 chr4 15517560 15517669
gga-mir-1757 chr4 16541306 16541410
gga-mir-7469 chr4 18043001 18043067
gga-mir-6682 chr4 20900133 20900242
gga-mir-6688 chr4 21269413 21269522
gga-mir-1575 chr4 28998678 28998781
gga-mir-6668 chr4 33472329 33472438
gga-mir-6591 chr4 34196016 34196125
gga-mir-1627 chr4 38434799 38434868
gga-mir-1776 chr4 43047467 43047567
gga-mir-6632 chr4 44243713 44243822
gga-mir-1804 chr4 45821511 45821593
gga-mir-1730 chr4 47627247 47627339
gga-mir-1751 chr4 49506377 49506466
gga-mir-1679 chr4 50526287 50526374
gga-mir-7468 chr4 54145364 54145430
gga-mir-302b chr4 56692821 56692892
gga-mir-302c chr4 56693083 56693147
gga-mir-1811 chr4 56693205 56693285
gga-mir-302a chr4 56693386 56693452
gga-mir-302d chr4 56693721 56693789
gga-mir-367 chr4 56693857 56693929
gga-mir-7466 chr4 57749951 57749998
gga-mir-122b chr4 58317521 58317597
gga-mir-1814 chr4 59705671 59705744
gga-mir-1605 chr4 62660845 62660932
gga-mir-383 chr4 63595605 63595677
gga-mir-6586 chr4 68633335 68633444
gga-mir-218-1 chr4 74617807 74617915
gga-mir-1602 chr4 75836469 75836559
gga-mir-1701 chr4 78845682 78845758
gga-mir-6661 chr4 82213019 82213128
gga-mir-7467 chr4 82376451 82376513
gga-mir-6705 chr4 84644172 84644281
gga-mir-103-2 chr4 88047783 88047865
gga-mir-146c chr4 88268236 88268364
gga-mir-1684a chr4 88602925 88603026
gga-mir-1654 chr4 88719865 88719958
gga-mir-6627 chr4 89228532 89228641
gga-mir-6579-2 chr5 516685 516798
gga-mir-6579-1 chr5 543583 543696
gga-mir-1808 chr5 983735 983825
gga-mir-1775 chr5 2455690 2455778
gga-mir-1760 chr5 3859360 3859452
gga-mir-1568 chr5 7569014 7569081
gga-mir-1463 chr5 9641946 9642055
gga-mir-6642 chr5 13052807 13052907
gga-mir-1663 chr5 15181878 15181979
gga-mir-1802 chr5 16372225 16372304
gga-mir-1725 chr5 22182228 22182296
gga-mir-6603 chr5 22404967 22405076
gga-mir-6706 chr5 22966049 22966158
gga-mir-6544 chr5 23747043 23747148
gga-mir-6685 chr5 24317892 24317991
gga-mir-6587 chr5 25484986 25485094
gga-mir-1710 chr5 27158286 27158365
gga-mir-1617 chr5 27598380 27598468
gga-mir-6683 chr5 29436768 29436877
gga-mir-1718 chr5 30723941 30724020
gga-mir-3532 chr5 32244881 32244964
gga-mir-6598 chr5 37147036 37147145
gga-mir-6645 chr5 38408374 38408483
gga-mir-1739 chr5 38516933 38517025
gga-mir-1799 chr5 39215817 39215900
gga-mir-1800 chr5 44412724 44412799
gga-mir-6552 chr5 44456296 44456399
gga-mir-6590 chr5 45676949 45677052
gga-mir-203a chr5 50592418 50592515
gga-mir-1771 chr5 51508701 51508786
gga-mir-1578 chr5 55044564 55044630
gga-mir-1638 chr5 56020281 56020367
gga-mir-1676 chr5 56301455 56301554
gga-mir-1716 chr5 57603653 57603757
gga-mir-1703 chr5 57886558 57886646
gga-mir-1579 chr6 2164858 2164924
gga-mir-1772 chr6 10054565 10054633
gga-mir-1590 chr6 11997264 11997362
gga-mir-1624 chr6 15372471 15372545
gga-mir-3537 chr6 16490397 16490473
gga-mir-6577 chr6 16782325 16782432
gga-mir-107 chr6 18945413 18945493
gga-mir-6657 chr6 19615057 19615166
gga-mir-202 chr6 21042710 21042798
gga-mir-6604 chr6 21904154 21904263
gga-mir-1674 chr6 22350667 22350762
gga-mir-146b chr6 22680083 22680187
gga-mir-1815 chr6 27635092 27635168
gga-mir-7472 chr6 29599895 29599957
gga-mir-1726 chr6 31856425 31856521
gga-mir-6560 chr6 31915142 31915251
gga-mir-6694 chr6 32132816 32132925
gga-mir-1812 chr7 1252400 1252487
gga-mir-1559 chr7 1318656 1318731
gga-mir-1694 chr7 5370847 5370944
gga-mir-6691-1 chr7 5728256 5728365
gga-mir-6691-2 chr7 5821835 5821944
gga-mir-1845 chr7 6597642 6597727
gga-mir-1603 chr7 9710392 9710478
gga-mir-1659 chr7 13177026 13177126
gga-mir-7474 chr7 14849462 14849536
gga-mir-6624 chr7 15758919 15759028
gga-mir-1713 chr7 15775767 15775865
gga-mir-10b chr7 15780526 15780635
gga-mir-1570 chr7 16274218 16274317
gga-mir-1733 chr7 18452934 18453017
gga-mir-1591 chr7 18810406 18810483
gga-mir-375 chr7 21842379 21842443
gga-mir-1788 chr7 21851756 21851843
gga-mir-1582 chr7 23199976 23200064
gga-mir-1553 chr7 23245928 23246032
gga-mir-1599 chr7 23875684 23875745
gga-mir-3530 chr7 24770052 24770140
gga-mir-128-1 chr7 30116396 30116477
gga-mir-7473 chr7 32903858 32903919
gga-mir-1c chr7 34497646 34497719
gga-mir-6546 chr7 35757572 35757688
gga-mir-181a-1 chr8 1986687 1986790
gga-mir-181b-1 chr8 1986876 1986964
gga-mir-1801 chr8 3801341 3801443
gga-mir-199-2 chr8 4621376 4621483
gga-mir-214 chr8 4627233 4627342
gga-mir-1721 chr8 4977439 4977512
gga-mir-6665 chr8 5198809 5198918
gga-mir-1633 chr8 5302569 5302663
gga-mir-1618 chr8 7422181 7422259
gga-mir-1655 chr8 7475856 7475958
gga-mir-6561 chr8 10191131 10191235
gga-mir-1610 chr8 10666679 10666766
gga-mir-137 chr8 11470723 11470818
gga-mir-1589 chr8 15393407 15393485
gga-mir-1761 chr8 15744295 15744375
gga-mir-1620 chr8 17395557 17395644
gga-mir-1665 chr8 18639978 18640055
gga-mir-6647 chr8 18702753 18702862
gga-mir-1595 chr8 19665805 19665869
gga-mir-6622 chr8 21075069 21075178
gga-mir-1809 chr8 21587584 21587691
gga-mir-1562 chr8 23064105 23064206
gga-mir-6549 chr8 23386523 23386635
gga-mir-6623 chr8 23516908 23517017
gga-mir-1675 chr8 23549022 23549121
gga-mir-101-2 chr8 27164028 27164103
gga-mir-6653 chr8 27652713 27652822
gga-mir-1630 chr9 378052 378108
gga-mir-1704 chr9 4390437 4390507
gga-mir-1612 chr9 4482098 4482181
gga-mir-1608 chr9 4723169 4723261
gga-mir-1577 chr9 4942397 4942481
gga-mir-1741 chr9 6653578 6653650
gga-mir-6574 chr9 7104153 7104259
gga-mir-1458 chr9 10140254 10140363
gga-mir-6611 chr9 11797059 11797168
gga-mir-1762 chr9 13364365 13364462
gga-mir-1653 chr9 13811232 13811335
gga-mir-6558 chr9 14633406 14633527
gga-mir-3535 chr9 14752127 14752208
gga-mir-1755 chr9 15091729 15091819
gga-mir-6617 chr9 15660966 15661075
gga-mir-551 chr9 19886058 19886170
gga-mir-1692 chr9 21603206 21603294
gga-mir-16-2 chr9 21653410 21653503
gga-mir-15b chr9 21653585 21653675
gga-mir-1658 chr9 22400082 22400171
gga-mir-1754 chr9 22907054 22907121
gga-mir-1793 chr9 23006780 23006876
gga-mir-6556 chr9 23087166 23087271
gga-mir-1594 chrZ 193844 193934
gga-mir-122-1 chrZ 761054 761130
gga-mir-6649 chrZ 8444188 8444326
gga-mir-6613 chrZ 10464854 10464963
gga-mir-1631 chrZ 16311551 16311624
gga-mir-449a chrZ 16561816 16561901
gga-mir-449b chrZ 16561966 16562059
gga-mir-449c chrZ 16562969 16563040
gga-mir-1584 chrZ 18733802 18733866
gga-mir-101-1 chrZ 27369524 27369602
gga-mir-6669 chrZ 27570294 27570401
gga-mir-1779 chrZ 32169221 32169312
gga-mir-7482-1 chrZ 34159350 34159406
gga-mir-7482-2 chrZ 34174431 34174487
gga-mir-7482-3 chrZ 34189817 34189873
gga-mir-7482-4 chrZ 34254330 34254386
gga-mir-7482-5 chrZ 34269364 34269420
gga-mir-1556 chrZ 34504176 34504261
gga-mir-1416 chrZ 34781501 34781589
gga-mir-204-1 chrZ 35040031 35040134
gga-mir-7-1 chrZ 39936987 39937095
gga-mir-7439 chrZ 40511125 40511198
gga-mir-23b chrZ 41508036 41508121
gga-mir-27b chrZ 41508272 41508368
gga-mir-24 chrZ 41508805 41508872
gga-mir-1456 chrZ 44756224 44756333
gga-mir-6651 chrZ 48508022 48508131
gga-mir-6565 chrZ 55328621 55328721
gga-mir-9-2 chrZ 60293370 60293456
gga-mir-7479-1 chrZ 60638626 60638703
gga-mir-7479-2 chrZ 60641067 60641144
gga-mir-7479-3 chrZ 60649964 60650041
gga-mir-3607 chrZ 61061980 61062087
gga-mir-1756a chrZ 62615973 62616062
gga-mir-7481 chrZ 64128336 64128387
gga-mir-7440 chrZ 64494384 64494452
gga-mir-1452 chrZ 66266224 66266301
gga-mir-1459 chrZ 66269415 66269499
gga-mir-7437 chrZ 68307634 68307708
gga-mir-2954 chrZ 70557171 70557238
gga-mir-1583 chrZ 70558469 70558566
gga-mir-2131 chrZ 70567945 70568033
gga-mir-7438 chrZ 70599677 70599741
gga-mir-31 chrZ 78336380 78336473
gga-mir-7483 chrZ 81357266 81357322
There are some duplicated lines in file A and there is no duplicated lines in file B. Some lines in file A can exactly match the first portion of a line in file B. For example, the line 1 in file A is
, and it matches the line 617 in file B
Code :
gga-mir-181b-1 chr8 1986876 1986964
and I want this line 617 in file B as the output for the first line. Some lines in file A has no matching lines in file B and I want the output is N/A. So I expect the output file should have the same 102 lines as file A and the output file is like this
Code :
gga-mir-181b-1 chr8 1986876 1986964
gga-mir-181b-2 chr17 9498543 9498627
gga-mir-199-1 chr17 5034551 5034644
N/A
gga-mir-204-1 chrZ 35040031 35040134
...
. I was trying to use this script
Code :
grep -Fwf file_A file_B
. but the output file removed the duplicated matching lines and the matching line order is not based on the line order in file A. I hope some one can help me. Thank you!
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