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Full Discussion: awk or perl to parse file
Top Forums Shell Programming and Scripting awk or perl to parse file Post 302938021 by vgersh99 on Wednesday 11th of March 2015 11:21:06 AM
Old 03-11-2015
Quote:
Originally Posted by cmccabe
I have put that in a bash menu below, but the syntax is not correct as the menu opens and closes right away. Thank you Smilie.

Code:
Code:
 convert() {
    printf "\n\n"
    cd 'C:\Users\cmccabe\Desktop\annovar'
    awk -f FNR > 1{           for(i=1;i<=NF;i++)          if ($i ~ /^NC_0000/) {        n=split($i,a, "[.:>_]")        print a[2]+0, a[5]+0, a[5]+0substr(a[5],length(a[5])), a[n]      } }  OFS='\t' ${id}.txt
        *) convert ;;
    esac
}

${id}.txt is GJB-2.txt, but since the name of that file can change I used a variable to represent the file. Thanks.
Does the script work in the stand-alone mode?
You need to revisit your shell/awk manuals - that's not the way integrate awk in a shell script.
Thanks.
 

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mitem_value(3X) 														   mitem_value(3X)

NAME
mitem_value - set and get menu item values SYNOPSIS
#include <menu.h> int set_item_value(ITEM *item, bool value); bool item_value(const ITEM *item); DESCRIPTION
If you turn off the menu option O_ONEVALUE (e.g., with set_menu_opts or menu_opts_off; see menu_opts(3X)), the menu becomes multi-valued; that is, more than one item may simultaneously be selected. In a multi_valued menu, you can used set_item_value to select the given menu item (second argument TRUE) or deselect it (second argument FALSE). RETURN VALUE
The function set_item_value returns one of the following: E_OK The routine succeeded. E_SYSTEM_ERROR System error occurred (see errno). E_REQUEST_DENIED The menu driver could not process the request. SEE ALSO
curses(3X), menu(3X). NOTES
The header file <menu.h> automatically includes the header file <curses.h>. PORTABILITY
These routines emulate the System V menu library. They were not supported on Version 7 or BSD versions. AUTHORS
Juergen Pfeifer. Manual pages and adaptation for new curses by Eric S. Raymond. mitem_value(3X)
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