Hi,
I have this input file called ttbitnres (which is catenated and sorted):-
8 0.4444 213
10 0.5555 342
11 0.5555 321
12 0.5555 231
13 0.4444 400
My code is at :-
#!/bin/bash
echo -e Version "\t" Number of Pass "\t" Number of Fail "\t" Rank Position "\t"Min "\t" Max... (1 Reply)
hi!
i have a file like the attachement.
I'd like to get for each line the min, max and average values. (there is 255 values for each line)
how can i get that ?
i try this, is it right?
BEGIN {FS = ","; OFS = ";";max=0;min=0;moy=0;total=0;freq=890}
$0 !~ /Trace1:/ {
... (1 Reply)
Hi,
I have a text file containing numbers. There are up to 6 numbers per row and I need to read them, check if they are 0 and if they are not zero check if they are within a given interval (min,max). If they exceed the max or min they should be set to max or min respectively, if they are in the... (4 Replies)
Hello Experts,
I have got a txt files which has multiple columns, I want to get the max, min and diff (max-min) for each column in the same txt file. Example:
cat file.txt
a 1 4
b 2 5
c 3 6
I want ouput like:
cat file.txt
a 1 4
b 2 5
c 3 6
Max 3 6
Min 1 4
Diff 2 2
awk 'min=="" ||... (4 Replies)
I have to find the min and max on a specific column in a file after sending that column and one other to a output file but I keep getting a maximum of zero
below is what i have so far if anyone can give me advice on what i am doing wrong the help would be much appreciated
# ! /usr/bin/perl -w... (2 Replies)
I need to use awk for this task !
input (fields are separated by ";"):
1%2%3%4%;AA
5%6%7%8%9;AA
1%2%3%4%5%6;BB
7%8%9%10%11%12;BBIn the 1st field there are patterns composed of numbers separated by "%".
The 2nd field define groups (here two different groups called "AA" and "BB").
Records... (8 Replies)
aaa: 3 ms
aaa: 2 ms
aaa: 5 ms
aaa: 10 ms
..........
to get the 3 2 5 10 ...'s min avg and max
something like
min: 2 ms avg: 5 ms max: 10 ms (2 Replies)
Hi,
I need your kind help to get min and max values from file based on value in $5 .
File1
SP12.3 stc 2240806 2240808 + ID1_N003 ID2_N003T0
SP12.3 sto 2241682 2241684 + ID1_N003 ID2_N003T0
SP12.3 XE 2239943 2240011 + ID1_N003 ID2_N003T0
SP12.3 XE 2240077 2241254 + ID1_N003 ... (12 Replies)
Discussion started by: redse171
12 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)
02-09-2015
