I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line or sequence of lines starting with "Chr" they have to be displayed in output file with that sample.... (9 Replies)
I have two input files (given below) and to compare each line of the File1 with each line of File2 starts with '>sample1'. If a match occurs and that matched line in the File2 contains another line or sequence of lines starting with "Chr" they have to be displayed in output file with that sample.... (4 Replies)
KINDLY HELP ME FOR SHELL SCRIPTING FOR THIS TASK.
My input file consists of thousands of sequence in this format. The given input file consists of four sequences which are starting with ‘>’ symbol (each sequence shown in different colour for easy understanding). I have to use a command at $... (3 Replies)
Hi All,
I need a shell script which could insert a sequence number column inside a dat file(pipe delimited).
I have the dat file similar to the one as shown below..
|A|B|C||D|E
|F|G|H||I|J
|K|L|M||N|O
|P|Q|R||S|T
As shown above, the column 4 is currently blank and i need to insert sequence... (5 Replies)
Dear Perl's Users,
Could anyone help me how to solve my problem. I have data with details below.
TTY NAME SEQUENCES
U-0 UNIX 0
U-1 UNIX 1
U-2 UNIX 2 <-- From 2 jump to 5
U-5 UNIX 5
U-6 UNIX 6 <-- From 6 jump to 20
U-20 ... (2 Replies)
Dear All members,
i have some trouble here, i want to ask your help. The case is:
I have some data, it's like:
-ABCD1234
-ABCD1235
-ABCD1237
-BCDE1111
-BCDE1112
-BCDE1114
there is some missing data's sequence (the format is: ABCD = name 1234 = sequence).
I want to print the... (2 Replies)
Hi,
I need to find out the missing sequence from a list. However the issue is there is not a fixed start and end, it depends on the generation of files.
For eg, it might start with 4000 and end with 9000.
Based on this, I need a script which greps the start and end sequence from the... (3 Replies)
Hi,
I have a file which contains few columns and the first column has the file names, and I would like to identify the missing file sequence number form the file and would copy to another file. My files has data in below format.
APKRISPSIN320131231201319_0983,1,54,125,... (5 Replies)
Dear all
i am having file with max 24 entries. i want to find which sequence is missing
file is like this
df00231587.dat
df01231587.dat
df03231587.dat
df05231587.dat
.
.
.
df23231587.dat
the changing seq is 00-23,so i would like to find out which seq is missing like in above... (13 Replies)
Hi All,
I have a requirement that i need to list only the missing sequences with a unix script.
For Example:
Input:
FILE_001.txt
FILE_002.txt
FILE_005.txt
FILE_006.txt
FILE_008.txt
FILE_009.txt
FILE_010.txt
FILE_014.txt
Output:
FILE_003.txt
FILE_004.txt
FILE_007.txt
FILE_011.txt... (5 Replies)
Discussion started by: Arun1992
5 Replies
LEARN ABOUT FREEBSD
atf-sh
ATF-SH(1) BSD General Commands Manual ATF-SH(1)NAME
atf-sh [-s shell] -- interpreter for shell-based test programs
SYNOPSIS
atf-sh script
DESCRIPTION
atf-sh is an interpreter that runs the test program given in script after loading the atf-sh(3) library.
atf-sh is not a real interpreter though: it is just a wrapper around the system-wide shell defined by ATF_SHELL. atf-sh executes the inter-
preter, loads the atf-sh(3) library and then runs the script. You must consider atf-sh to be a POSIX shell by default and thus should not
use any non-standard extensions.
The following options are available:
-s shell Specifies the shell to use instead of the value provided by ATF_SHELL.
ENVIRONMENT
ATF_LIBEXECDIR Overrides the builtin directory where atf-sh is located. Should not be overridden other than for testing purposes.
ATF_PKGDATADIR Overrides the builtin directory where libatf-sh.subr is located. Should not be overridden other than for testing purposes.
ATF_SHELL Path to the system shell to be used in the generated scripts. Scripts must not rely on this variable being set to select a
specific interpreter.
EXAMPLES
Scripts using atf-sh(3) should start with:
#! /usr/bin/env atf-sh
Alternatively, if you want to explicitly choose a shell interpreter, you cannot rely on env(1) to find atf-sh. Instead, you have to hardcode
the path to atf-sh in the script and then use the -s option afterwards as a single parameter:
#! /path/to/bin/atf-sh -s/bin/bash
ENVIRONMENT
ATF_SHELL Path to the system shell to be used in the generated scripts.
SEE ALSO atf-sh(3)BSD September 27, 2014 BSD