12-02-2014
Hi RudiC,
Thanks for your reply. Sorry I wasnt very clear.
Yes the "Given" is in a file.I want to parse multiple input files named "chr{n}_GEN2bim" where n comes from the first column of my "Given" file.
Thanks
SA
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
I am a newbie to awk and c programming, however am not a unix newbie. However, I do need help with a kshell script I am writing. It is almost complete, the last step is killing me. Any help would be greatly appreciated. What I am trying to do is cat a text file that has usernames. Then, using... (2 Replies)
Discussion started by: synergy_texas
2 Replies
2. Shell Programming and Scripting
Hi All,
I am trying to pass a parameter to AWK on my KSH shell prompt as below.
var1=2
echo $var1
awk -v var2=${var1} '{print var2}' testfile.txt
I am passing the input file (testfile) to awk to get some o/p. It is having 10 records.
When I run AWK, it is throwing the following errors... (1 Reply)
Discussion started by: Raamc
1 Replies
3. Shell Programming and Scripting
Hi,
I am trying to print a specific line in a file through sed or awk. The line number will be passed as a parameter from the previous step. My code looks as below.
TEMP3=`sed -n '$TEMP2p' $FILEPATH/Log.txt`
$TEMP2, I am getting from the previous step which is a numerical value(eg:3).
... (2 Replies)
Discussion started by: satyasrin82
2 Replies
4. Shell Programming and Scripting
I have an for loop that reads the following file
cat param.cfg
val1:env1:opt1
val2:env2:opt2
val3:env3:opt3
val4:env4:opt4
.
.
The for loop extracts the each line of the file so that at any one point, the value of i is
val1:env1:opt1 etc...
I would like to extract each... (19 Replies)
Discussion started by: goddevil
19 Replies
5. Shell Programming and Scripting
I have to replace the pattern found in one file in another file with null/empty "" if found on the fields 3 or 4 ONLY
File 1
====
10604747|Mxdef|9999|9999|9999|2012-03-04 00:00:59
10604747|Mcdef|8888|9999|8888|2012-03-04 00:00:59
.
.
.
File 2
====
9999
8888
.
.
.
Expected... (7 Replies)
Discussion started by: machomaddy
7 Replies
6. Shell Programming and Scripting
Learning, stumbling! My progress in shell scripting is slow. Now I have this doubt:
I have the following file (users.txt):
AU0909,on
AU0309,off
AU0209,on
AU0109,off
And this file (userson.txt)
AU0909
AU0209
AU0109
AU0309
I just want to set those users on userson.txt to "off" in... (14 Replies)
Discussion started by: quinestor
14 Replies
7. Shell Programming and Scripting
i am passing input parameter 'one_two' to the script , the script output should display the result as below
one_1two
one_2two
one_3two
if
then
echo " Usage : <$0> <DATABASE> "
exit 0
else
for DB in 1 2 3
do
DBname=`$DATABASE | awk -F "_" '{print $1_${DB}_$2}`
done
fi (5 Replies)
Discussion started by: only4satish
5 Replies
8. Shell Programming and Scripting
Hi,
I have a situation where I need to create a SQL statement using Unix script for each value in first field (ID). The file looks like this.
Id,TARGET_FIELD_NAME,SOURCE_FIELD_NAME
1,Test_Rate,Field1
1,Test_Factor,Field2
1,Test_Size,Field3
2,Test_Rate,Field4
2,Test_Factor,Field5... (3 Replies)
Discussion started by: kiranredz
3 Replies
9. UNIX for Dummies Questions & Answers
I have a shell script (.sh) and I want to pass a parameter value to the awk command but I am getting exception, please assist.
diff=$1$2.diff
id=$2 new=new_$diff
echo "My id is $1"
echo "I want to sync for user account $id"
##awk command I am using is as below
cat $diff |... (1 Reply)
Discussion started by: Sarita Behera
1 Replies
10. Shell Programming and Scripting
Hi All,
I am new to AWK programming. I have the following for loop in my awk program.
cat printhtml.awk:
BEGIN
-------- <some code here>
END{
----------<some code here>
for(N=0; N<H; N++)
{
for(M=5; M<D; M++) print "\t" D "";
}
-----
}
... (2 Replies)
Discussion started by: ctrld
2 Replies
LEARN ABOUT SUSE
funindex
funindex(1) SAORD Documentation funindex(1)
NAME
funindex - create an index for a column of a FITS binary table
SYNOPSIS
funindex <switches> <iname> [oname]
OPTIONS
NB: these options are not compatible with Funtools processing. Please
use the defaults instead.
-c # compress output using gzip"
-a # ASCII output, ignore -c (default: FITS table)"
-f # FITS table output (default: FITS table)"
-l # long output, i.e. with key value(s) (default: long)"
-s # short output, i.e. no key value(s) (default: long)"
DESCRIPTION
The funindex script creates an index for the specified column (key) by running funtable -s (sort) and then saving the column value and the
record number for each sorted row. This index will be used automatically
by funtools filtering of that column, provided the index file's modification date is later than that of the data file.
The first required argument is the name of the FITS binary table to index. Please note that text files cannot be indexed at this time. The
second required argument is the column (key) name to index. While multiple keys can be specified in principle, the funtools index process-
ing assume a single key and will not recognize files containing multiple keys.
By default, the output index file name is [root]_[key].idx, where [root] is the root of the input file. Funtools looks for this specific
file name when deciding whether to use an index for faster filtering. Therefore, the optional third argument (output file name) should not
be used for funtools processing.
For example, to create an index on column Y for a given FITS file, use:
funindex foo.fits Y
This will generate an index named foo_y.idx, which will be used by funtools for filters involving the Y column.
SEE ALSO
See funtools(7) for a list of Funtools help pages
version 1.4.2 January 2, 2008 funindex(1)