Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Extract columns based on the first line of each column Post 302924789 by yuejian on Wednesday 12th of November 2014 11:36:55 AM
Old 11-12-2014
Extract columns based on the first line of each column

Sorry to bother you guys again. I have a file1 with multiple columns like this:
Code:
gga_miR_100	gga_miR_300	gga_miR_3500	gga_miR_4600	gga_miR_5600	gga_miR_30	gga_miR_500
kj	rwg	ghhh	jy	jyu	we	vf
5g	5hg	h6	56h	i8	45t	44r4
4bg	4r546	9lgtr	(fer)	4fr	f433	
	3feev	f4	bf4	35g		
		vfr		ge		
		2rr

and I also have a file2 have multiple lines like this:
Code:
gga_miR_3500
gga_miR_4600
gga_miR_500
gga_miR_30

How can I extract the columns in file1 if the first line of each column in file1 exactly match the lines in file2, so I am expecting the output file is like this:
Code:
gga_miR_3500	gga_miR_4600	gga_miR_30	gga_miR_500
ghhh	jy	we	vf
h6	56h	45t	44r4
9lgtr	(fer)	f433	
f4	bf4		
vfr			
2rr

 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

extract column based on name

I need to extract a column from a tab delimited text file based on the string in the first row. (i.e. extract the column labeled "reaction_time"). I know that this can be done with awk by determining the column #, but I want to do it based on a search for the string b/c the column number changes... (3 Replies)
Discussion started by: t27
3 Replies

2. UNIX for Advanced & Expert Users

Grep all the columns based on a particular column

This is the data file that I have 21879, 0, 22, 58, 388 0, -1, 300, 1219172589765, 1708, 0, 200, 21891, 0, 0, 33, 309 0, -1, 300, 1219172591478, 1768, 0, 200, 22505, 0, 0, 33, 339 0, -1, 300, 1219172593251, 1738, 0, 200, 21888, 0, 1, 33, 308 0, -1, 300, 1219172594995, 633, 0, 200, 24878,... (2 Replies)
Discussion started by: pmallur
2 Replies

3. Shell Programming and Scripting

extract csv based on column value

Hi I have a csv file which is below A,5 B,6 C,10 D,7 I want the values who's second column is greater than 7 say C,10 D,7 Help me please... Thanks, Maruth (3 Replies)
Discussion started by: maruthavanan
3 Replies

4. Shell Programming and Scripting

sum multiple columns based on column value

i have a file - it will be in sorted order on column 1 abc 0 1 abc 2 3 abc 3 5 def 1 7 def 0 1 -------- i'd like (awk maybe?) to get the results (any ideas)??? abc 5 9 def 1 8 (2 Replies)
Discussion started by: jjoe
2 Replies

5. Emergency UNIX and Linux Support

[Solved] Extract records based on a repeated column value

Hi guys, I need help in making a command to find some data. I have multiple files in which multiple records are present.. Each record is separated with a carriage return and in each record there are multiple fields with each field separated by "|" what i want is that I want to extract... (1 Reply)
Discussion started by: m_usmanayub
1 Replies

6. Shell Programming and Scripting

displaying columns based on column name

Hello, I have a huge file with many columns . I want to use the names of the columns to print columns to another file. for example file.txt COLA COLB COLC COLD 1 2 3 5 3 5 6 9 If I give name for multiple columns to the code:... (5 Replies)
Discussion started by: ryan9011
5 Replies

7. Shell Programming and Scripting

HELP: Shell Script to read a Log file line by line and extract Info based on KEYWORDS matching

I have a LOG file which looks like this Import started at: Mon Jul 23 02:13:01 EDT 2012 Initialization completed in 2.146 seconds. -------------------------------------------------------------------------------- -- Import summary for Import item: PolicyInformation... (8 Replies)
Discussion started by: biztank
8 Replies

8. Shell Programming and Scripting

Merging columns based on one or more column in two files

I have two files. FileA.txt 30910 rs7468327 36587 rs10814410 91857 rs9408752 105797 rs1133715 146659 rs2262038 152695 rs2810979 181843 rs3008128 182129 rs3008131 192118 rs3008170 FileB.txt 30910 1.9415219673 0 36431 1.3351312477 0.0107191428 36587 1.3169171182... (2 Replies)
Discussion started by: genehunter
2 Replies

9. Shell Programming and Scripting

Extract columns based on header

Hi to all, I have two files. File1 has no header, two columns: sample1 A sample2 B sample3 B sample4 C sample5 A sample6 D sample7 D File2 has a header, except for the first 3 columns (chr,start,end). "sample1" is the header for the 4th ,5th ,6th columns, "sample2" is the header... (4 Replies)
Discussion started by: aec
4 Replies

10. Shell Programming and Scripting

Insert Columns before the last Column based on the Count of Delimiters

Hi, I have a requirement where in I need to insert delimiters before the last column of the total delimiters is less than a specified number. Say if the delimiters is less than 139, I need to insert 2 columns ( with blanks) before the last field awk -F 'Ç' '{ if (NF-1 < 139)} END { "Insert 2... (5 Replies)
Discussion started by: arunkesi
5 Replies
comm(1) 							   User Commands							   comm(1)

NAME
comm - select or reject lines common to two files SYNOPSIS
comm [-123] file1 file2 DESCRIPTION
The comm utility reads file1 and file2, which must be ordered in the current collating sequence, and produces three text columns as output: lines only in file1; lines only in file2; and lines in both files. If the input files were ordered according to the collating sequence of the current locale, the lines written will be in the collating sequence of the original lines. If not, the results are unspecified. OPTIONS
The following options are supported: -1 Suppresses the output column of lines unique to file1. -2 Suppresses the output column of lines unique to file2. -3 Suppresses the output column of lines duplicated in file1 and file2. OPERANDS
The following operands are supported: file1 A path name of the first file to be compared. If file1 is -, the standard input is used. file2 A path name of the second file to be compared. If file2 is -, the standard input is used. USAGE
See largefile(5) for the description of the behavior of comm when encountering files greater than or equal to 2 Gbyte ( 2**31 bytes). EXAMPLES
Example 1: Printing a list of utilities specified by files If file1, file2, and file3 each contain a sorted list of utilities, the command example% comm -23 file1 file2 | comm -23 - file3 prints a list of utilities in file1 not specified by either of the other files. The entry: example% comm -12 file1 file2 | comm -12 - file3 prints a list of utilities specified by all three files. And the entry: example% comm -12 file2 file3 | comm -23 -file1 prints a list of utilities specified by both file2 and file3, but not specified in file1. ENVIRONMENT VARIABLES
See environ(5) for descriptions of the following environment variables that affect the execution of comm: LANG, LC_ALL, LC_COLLATE, LC_CTYPE, LC_MESSAGES, and NLSPATH. EXIT STATUS
The following exit values are returned: 0 All input files were successfully output as specified. >0 An error occurred. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNWesu | +-----------------------------+-----------------------------+ |CSI |enabled | +-----------------------------+-----------------------------+ |Interface Stability |Standard | +-----------------------------+-----------------------------+ SEE ALSO
cmp(1), diff(1), sort(1), uniq(1), attributes(5), environ(5), largefile(5), standards(5) SunOS 5.10 3 Mar 2004 comm(1)
All times are GMT -4. The time now is 08:23 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy