Sponsored Content
Top Forums Shell Programming and Scripting Match text in a range and copy value Post 302923134 by Chubler_XL on Thursday 30th of October 2014 04:02:56 PM
Old 10-30-2014
Can you give us a worked example as there appear to be some unspecified issues.

For example:

1) Is the value before the colon (eg chr1) used for anything? Does this need to match with the values in the exons.txt file?

2) The exons.txt file contains overlapping ranges eg:
Code:
chr1:16356-17015 WASH7P 660
chr1:16607-17305 WASH7P 699
chr1:16982-17618 WASH7P 637

what output would you expect for chr1:16999-17010 A_55_P12345678 0.22222
This User Gave Thanks to Chubler_XL For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Match a specific IP range

Hello all, I would like a bit of help with a problem I am having. I have the following example file: $ cat test_hosts 10.10.2.3 host1 10.10.2.4 host2 10.10.2.130 host3 10.10.2.5 host4 10.10.2.230 host5 10.10.2.22 host6 I need to match all IP addresses in the 10.10.2.1-10.10.2.22... (5 Replies)
Discussion started by: sylaan
5 Replies

2. Shell Programming and Scripting

match range of different numbers by AWK

if the column1 and 2 in both files has same key (for example "a" and "a1") compare each first key value(a1 of a) of input2 (for example 1-4 or 65-69 not 70-100 or 44-40 etc) with all the values in input1. if the range of first key value in input2 is outof range in input1 values named it as out... (54 Replies)
Discussion started by: repinementer
54 Replies

3. Shell Programming and Scripting

Copy range of directory name

Hello folks hope all are doing well, i need to compress directories with range, i have total directories from 000-199 and i want to copy directories from 010 onwards to 020 meants total 11 directories, please suggest what regex will i use. Thanks, Bash (2 Replies)
Discussion started by: learnbash
2 Replies

4. Shell Programming and Scripting

awk to match a numeric range specified by two columns

Hi Everyone, Here's a snippet of my data: File 1 = testRef2: A1BG - 13208 13284 AAA1 - 34758475 34873943 AAAS - 53701240 53715412File 2 = 42MLN.3.bedS2: 13208 13208 13360 13363 13484 13518 13518My awk script: awk 'NR == FNR{a=$1;next} {$1>=a}{$1<=a}{print... (5 Replies)
Discussion started by: heecha
5 Replies

5. Shell Programming and Scripting

Awk numeric range match only one digit?

Hello, I have a text file with lines that look like this: 1974 12 27 -0.72743 -1.0169 2 1.25029 1974 12 28 -0.4958 -0.72926 2 0.881839 1974 12 29 -0.26331 -0.53426 2 0.595623 1974 12 30 7.71432E-02 -0.71887 3 0.723001 1974 12 31 0.187789 -1.07114 3 1.08748 1975 1 1 0.349933 -1.02217... (2 Replies)
Discussion started by: meridionaljet
2 Replies

6. Shell Programming and Scripting

Match on a range of numbers

Hi, I'm trying to match a filename that could be called anything from vout001 to vout252 and was trying to do a small test but I'm not getting the result I thought I would.. Can some one tell me what I'm doing wrong? *****@********>echo $mynumber ... (4 Replies)
Discussion started by: Jazmania
4 Replies

7. Shell Programming and Scripting

Match to range in files

I am trying to create a script that will use the position in column A ($1) in 48850.txt and search for it in columns B ($2) in gene.txt. Then when it finds a match it copies the text in column A ($1) and places it in column C ($3) of 48850.txt. I have attached the files. Thank you :). The... (2 Replies)
Discussion started by: cmccabe
2 Replies

8. Shell Programming and Scripting

Match and copy by text

In the attached .txt file, I am trying to match $5 with $1 and copy $4 to $7. That file was created using: awk 'BEGIN {OFS="\t"} {sub("chr","",$1)} {print $5,$2,$3,$1,$4,$7} {print $6,$3,$2,$1}' matrix_pxlence.txt > output.txt but I can not seem to add this last bit to the command. ... (1 Reply)
Discussion started by: cmccabe
1 Replies

9. Shell Programming and Scripting

Get range out using sed or awk, only if given pattern match

Input: START OS:: UNIX Release: xxx Version: xxx END START OS:: LINUX Release: xxx Version: xxx END START OS:: Windows Release: xxx Version: xxx ENDHere i am trying to get all the information between START and END, only if i could match OS Type. I can get all the data between the... (3 Replies)
Discussion started by: Dharmaraja
3 Replies

10. Shell Programming and Scripting

awk to print text in field if match and range is met

In the awk below I am trying to match the value in $4 of file1 with the split value from $4 in file2. I store the value of $4 in file1 in A and the split value (using the _ for the split) in array. I then strore the value in $2 as min, the value in $3 as max, and the value in $1 as chr. If A is... (6 Replies)
Discussion started by: cmccabe
6 Replies
FLARE(6)							 flare User Manual							  FLARE(6)

NAME
flare - diablo like rpg game DESCRIPTION
This manual page documents briefly the game flare and the files it uses. flare is a diablo like rpg game. FILES
settings.txt flare does not have a settings dialogue yet. You can manipulate flare's settings in the settings.txt instead. It is located in one of the following paths: $XDG_CONFIG_HOME/flare $HOME/.config/flare ./config keybindings.txt You can manipulate flare's default key bindings in this file. It is located in one of the following paths: $XDG_CONFIG_HOME/flare $HOME/.config/flare ./config save[0-9]{?}.txt Savegames are simple txt files in flare. You can find them at one of these places: $XDG_DATA_HOME/flare $HOME/.local/share/flare ./saves If permissions are correct, the game is automatically saved when you exit. ENVIONMENT
XDG_CONFIG_HOME, $XDG_DATA_HOME flare follows the XDG stanard, see FILES section above. BUGS
If you should find a bug in flare, please report it at the official BTS at: https://github.com/clintbellanger/flare/issues. AUTHOR
Jan-Hendrik Peters <hennr@hennr.name> Wrote this manpage for the Debian system. COPYRIGHT
Copyright (C) 2011 Jan-Hendrik Peters This manual page was written for the Debian system (and may be used by others). Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 3 or (at your option) any later version published by the Free Software Foundation. On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL. flare 12/26/2011 FLARE(6)
All times are GMT -4. The time now is 05:48 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy