|
|
Sponsored Content
Top Forums
Shell Programming and Scripting
Match text in a range and copy value
Post 302923090 by cmccabe on Thursday 30th of October 2014 09:16:28 AM
10-30-2014
Yes, you have it correct. I did not even see that match. Thank you 
.
For example should chr1:14895-14944 (from line 1 of Files.txt) fall with the range of chr1:14111-15079 (from line 4 of exons.txt)?
Thanks again.
.For example should chr1:14895-14944 (from line 1 of Files.txt) fall with the range of chr1:14111-15079 (from line 4 of exons.txt)?
Thanks again.
|
|
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello all,
I would like a bit of help with a problem I am having. I have the following example file:
$ cat test_hosts
10.10.2.3 host1
10.10.2.4 host2
10.10.2.130 host3
10.10.2.5 host4
10.10.2.230 host5
10.10.2.22 host6
I need to match all IP addresses in the 10.10.2.1-10.10.2.22... (5 Replies)
Discussion started by: sylaan
5 Replies
2. Shell Programming and Scripting
if the column1 and 2 in both files has same key (for example "a" and "a1") compare each first key value(a1 of a) of input2 (for example 1-4 or 65-69 not 70-100 or 44-40 etc) with all the values in input1.
if the range of first key value in input2 is outof range in input1 values named it as out... (54 Replies)
Discussion started by: repinementer
54 Replies
3. Shell Programming and Scripting
Hello folks hope all are doing well, i need to compress directories with range, i have total directories from 000-199
and i want to copy directories from 010 onwards to 020 meants total 11 directories, please suggest what regex will i use.
Thanks,
Bash (2 Replies)
Discussion started by: learnbash
2 Replies
4. Shell Programming and Scripting
Hi Everyone,
Here's a snippet of my data:
File 1 = testRef2:
A1BG - 13208 13284
AAA1 - 34758475 34873943
AAAS - 53701240 53715412File 2 = 42MLN.3.bedS2:
13208
13208
13360
13363
13484
13518
13518My awk script:
awk 'NR == FNR{a=$1;next} {$1>=a}{$1<=a}{print... (5 Replies)
Discussion started by: heecha
5 Replies
5. Shell Programming and Scripting
Hello,
I have a text file with lines that look like this:
1974 12 27 -0.72743 -1.0169 2 1.25029
1974 12 28 -0.4958 -0.72926 2 0.881839
1974 12 29 -0.26331 -0.53426 2 0.595623
1974 12 30 7.71432E-02 -0.71887 3 0.723001
1974 12 31 0.187789 -1.07114 3 1.08748
1975 1 1 0.349933 -1.02217... (2 Replies)
Discussion started by: meridionaljet
2 Replies
6. Shell Programming and Scripting
Hi,
I'm trying to match a filename that could be called anything from vout001 to vout252 and was trying to do a small test but I'm not getting the result I thought I would..
Can some one tell me what I'm doing wrong?
*****@********>echo $mynumber ... (4 Replies)
Discussion started by: Jazmania
4 Replies
7. Shell Programming and Scripting
I am trying to create a script that will use the position in column A ($1) in 48850.txt and search for it in columns B ($2) in gene.txt. Then when it finds a match it copies the text in column A ($1) and places it in column C ($3) of 48850.txt. I have attached the files. Thank you :).
The... (2 Replies)
Discussion started by: cmccabe
2 Replies
8. Shell Programming and Scripting
In the attached .txt file, I am trying to match $5 with $1 and copy $4 to $7.
That file was created using:
awk 'BEGIN {OFS="\t"} {sub("chr","",$1)} {print $5,$2,$3,$1,$4,$7} {print $6,$3,$2,$1}' matrix_pxlence.txt > output.txt
but I can not seem to add this last bit to the command. ... (1 Reply)
Discussion started by: cmccabe
1 Replies
9. Shell Programming and Scripting
Input: START
OS:: UNIX
Release: xxx
Version: xxx
END
START
OS:: LINUX
Release: xxx
Version: xxx
END
START
OS:: Windows
Release: xxx
Version: xxx
ENDHere i am trying to get all the information between START and END, only if i could match OS Type.
I can get all the data between the... (3 Replies)
Discussion started by: Dharmaraja
3 Replies
10. Shell Programming and Scripting
In the awk below I am trying to match the value in $4 of file1 with the split value from $4 in file2. I store the value of $4 in file1 in A and the split value (using the _ for the split) in array. I then strore the value in $2 as min, the value in $3 as max, and the value in $1 as chr.
If A is... (6 Replies)
Discussion started by: cmccabe
6 Replies
LEARN ABOUT DEBIAN
mdbfontencoding
mdbFontEncoding(5) The m17n Library mdbFontEncoding(5) NAME
mdbFontEncoding - Font Encoding DESCRIPTION
The m17n library loads information about the encoding of each font form the m17n database by the tags <font, encoding>. The data is loaded as a plist of this format. FONT-ENCODING ::= PER-FONT * PER-FONT ::= '(' FONT-SPEC ENCODING [ REPERTORY ] ')' FONT-SPEC ::= '(' [ FOUNDRY FAMILY [ WEIGHT [ STYLE [ STRETCH [ ADSTYLE ]]]]] REGISTRY ')' ENCODING ::= SYMBOL FONT-SPEC is to specify properties of a font. FOUNDRY to REGISTRY are symbols corresponding to Mfoundry to Mregistry property of a font. See m17nFont for the meaning of each property. For instance, this FONT-SPEC: (nil alice0 lao iso8859-1) should be applied to all fonts whose family name is 'alice0 lao', and registry is 'iso8859-1'. ENCODING is a symbol representing a charset. A font matching FONT-SPEC supports all characters of the charset, and a character code is mapped to the corresponding glyph code of the font by this charset. REPERTORY is a symbol representing a charset or 'nil'. Omitting it is the same as specifying ENCODING as REPERTORY. If it is not 'nil', the charset specifies the repertory of the font, i.e, which character it supports. Otherwise, whether a specific character is supported by the font or not is asked to each font driver. For so called Unicode fonts (registry is 'iso10646-1'), it is recommended to specify 'nil' as REPERTORY because such fonts usually supports only a subset of Unicode characters. COPYRIGHT
Copyright (C) 2001 Information-technology Promotion Agency (IPA) Copyright (C) 2001-2011 National Institute of Advanced Industrial Science and Technology (AIST) Permission is granted to copy, distribute and/or modify this document under the terms of the GNU Free Documentation License <http://www.gnu.org/licenses/fdl.html>. Version 1.6.2 12 Jan 2011 mdbFontEncoding(5)