I'm trying to run some computations on a cluster and have found that a bsub array is what I need.. So I tried running a simple example I found
This should create 10 jobs that output "Job 1" "Job 2" .. etc. But when I run this from afs space I get the message
"LSB_JOBINDEX: Undefined variable."
LSB_JOBINDEX should be the index of the current array job.. Any ideas what's going on?
Dear Experts,
please help me out once again my array concepts is not very clear i have one text file like.
1|usa|hh
2|usa|ll
3|usa|vg
4|uk|nn
5|uk|bb
6|kuwait|mm
6|kuwait|jkj
7|dubai|hh
i want to store the third fied of a text file in he array and after that it should give me some... (6 Replies)
I am using /bin/ksh for this problem.
I have created some arrays with variable names as the array names:
cnt=1
{ while read myline; do
tempmeas="${meas%%;*}"
cto="${meas#*;}"
tempstream=$stream
# wholemeas holds the name of the array
# each array name... (0 Replies)
Hi,
I am REALLY a newbie of Unix: hope this question is not too odd.
Here is my problem:
I have to submit jobs to a remote platform (an IBM BCX/5120).
To submit I have tobsub < filename.jcf
and the .jcf file has usually the following content:
#!/bin/bash
#BSUB <commands of the bsub>... (1 Reply)
Hi!
I am currently using the bsub command to submit jobs to a cluster and I need to specify the name of the node to which i want the job sent. What do I add to my .pbs script to specify this?
Cheers (0 Replies)
Hi There!
I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like:
set NPROC = 10
and later on call BSUB using something like:
#BSUB -n $NPROC
unfortunately for me, this throws an error:
... (4 Replies)
"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \""
Can anybody please tell me the qsub equivalent for this command?
---------- Post updated at 06:48 AM... (0 Replies)
Hi everyone,
I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me? (2 Replies)
The red text at the bottom represents the three lines I want to address.
I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not three. I'm having difficulty in getting the syntax correct. Obviously, there is some confusion... (3 Replies)
Hello,
When I'm trying to send bsub job using script that executes fine in command line, I get nothing.
I do this for testing purposes, and the script scr_test is just one line:
pwd > outfile
So when I'm executing it in command line:
$ ./scr_test
it works fine producing the outfile with... (2 Replies)
Discussion started by: Sergey Aliev
2 Replies
LEARN ABOUT DEBIAN
ecaccess-job-get
ECACCESS-JOB-GET(1p) User Contributed Perl Documentation ECACCESS-JOB-GET(1p)NAME
ecaccess-job-get - Download a Job Output/Input/Error File
SYNOPSIS
ecaccess-job-get -version|-help|-manual
ecaccess-job-get [-debug] [-input|-error] [-encrypt] [-binary] [-bufsize length] job-id local-target-file
DESCRIPTION
Allow downloading the Job Output/Input/Error Files with identifier job-id.
The file is downloaded localy in the local-target-file.
ARGUMENTS
job-id The identifier of the ECaccess Job to retrieve.
local-target-file
The name of the Local Target File.
OPTIONS -input By default the Job Output File is downloaded. Using this option allow downloading the Job Input File instead.
-error By default the Job Output File is downloaded. Using this option allow downloading the Job Error File instead.
-encrypt
By default files are downloaded through the plain text channel (http). Using this option will force the download to occurs through
the SSL secure channel (https).
-binary By default files are downloaded as text files. This option will download files as binary files (decode_base64 required). Please
note that text files can also be downloaded in binary mode but text mode is faster. You should use this option if your job output
is containing non-text characters.
-bufsize length
Specify the length of the buffer (in bytes) which is used to download the file. The larger the buffer the smaller the number of
http/s requests. By default a buffer of 524288 bytes(512KB) is used.
-version
Display version number and exits.
-help Print a brief help message and exits.
-manual Prints the manual page and exits.
-debug Display the SOAP messages exchanged.
EXAMPLES
ecaccess-job-get 124356 ./ecaccess-job-124356.output
Download the output of the ECaccess Job 124356 in the local ecaccess-job-124356.output file.
SEE ALSO
ecaccess-job-delete, ecaccess-job-list, ecaccess-job-restart, ecaccess-job-submit and ecaccess.
perl v5.14.2 2012-04-16 ECACCESS-JOB-GET(1p)