10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hello,
When I'm trying to send bsub job using script that executes fine in command line, I get nothing.
I do this for testing purposes, and the script scr_test is just one line:
pwd > outfile
So when I'm executing it in command line:
$ ./scr_test
it works fine producing the outfile with... (2 Replies)
Discussion started by: Sergey Aliev
2 Replies
2. Shell Programming and Scripting
The red text at the bottom represents the three lines I want to address.
I'm dynamically creating a bsub with a perl script and would like to create the fasta_16S variable in a single line....not three. I'm having difficulty in getting the syntax correct. Obviously, there is some confusion... (3 Replies)
Discussion started by: jdilts
3 Replies
3. UNIX for Dummies Questions & Answers
Hi everyone,
I must write a Linux script for a biological analysis. I have an example for that which involves the "bsub" and "bsub-o" command, respectively. I cannot find a description for this command. Can you please help me? (2 Replies)
Discussion started by: Max_W
2 Replies
4. UNIX for Dummies Questions & Answers
"bsub -o /dev/null -P something -q normal -a optimize -n 1 -R \"rusage\ span\\" -J GUISETUP_${PID} \"dc_shell-t -f .dc_script_$job_index.tcl -output_log_file .dc_shell_$job_index.log \""
Can anybody please tell me the qsub equivalent for this command?
---------- Post updated at 06:48 AM... (0 Replies)
Discussion started by: chaudhary3031
0 Replies
5. Shell Programming and Scripting
Hi There!
I'm writing this LSF script to make it easier to send jobs to a cluster when varying certain parameters. At one point I'd like to do something like:
set NPROC = 10
and later on call BSUB using something like:
#BSUB -n $NPROC
unfortunately for me, this throws an error:
... (4 Replies)
Discussion started by: lrayo
4 Replies
6. Shell Programming and Scripting
Hi!
I am currently using the bsub command to submit jobs to a cluster and I need to specify the name of the node to which i want the job sent. What do I add to my .pbs script to specify this?
Cheers (0 Replies)
Discussion started by: mancino
0 Replies
7. Programming
i have no idea how to make a text file
abc efg
hij klm
nop qrs
to be a array such as, arr to be "abc efg" arr "hij kml" etc..... in C (2 Replies)
Discussion started by: tyckelvin1
2 Replies
8. UNIX for Dummies Questions & Answers
Hi,
I am REALLY a newbie of Unix: hope this question is not too odd.
Here is my problem:
I have to submit jobs to a remote platform (an IBM BCX/5120).
To submit I have tobsub < filename.jcf
and the .jcf file has usually the following content:
#!/bin/bash
#BSUB <commands of the bsub>... (1 Reply)
Discussion started by: silky
1 Replies
9. Shell Programming and Scripting
I am using /bin/ksh for this problem.
I have created some arrays with variable names as the array names:
cnt=1
{ while read myline; do
tempmeas="${meas%%;*}"
cto="${meas#*;}"
tempstream=$stream
# wholemeas holds the name of the array
# each array name... (0 Replies)
Discussion started by: ajgwin
0 Replies
10. Shell Programming and Scripting
Dear Experts,
please help me out once again my array concepts is not very clear i have one text file like.
1|usa|hh
2|usa|ll
3|usa|vg
4|uk|nn
5|uk|bb
6|kuwait|mm
6|kuwait|jkj
7|dubai|hh
i want to store the third fied of a text file in he array and after that it should give me some... (6 Replies)
Discussion started by: shary
6 Replies