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Shell Programming and Scripting
How to extract specific data?
Post 302891220 by LeftoverStew on Tuesday 4th of March 2014 12:37:17 PM
03-04-2014
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Hi,
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.
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My input:
>seq_1
DSASSTRRARRRRTPRTPSLRSRRSDVTCS
>seq_3
RMRLRRWRKSCSERS*RRSN
>seq_8
RTTGLSERPRLPTTASRSISSRWTR
>seq_10
NELPLEKGSLDSISIE
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QVQHRRHDHSRTQH*LCRRRQREDCDRLHR
>seq_4
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My input:
Data name: ABC001
Data length: 1000
Detail info
Data Direction Start_time End_time Length
1 forward 10 100 90
1 forward 15 200 185
2 reverse 50 500 450
Data name: XFG110
Data length: 100
Detail info
Data Direction Start_time End_time Length
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Input file:
#abc_1
SAASFASFGGDSGDSGDSGSDGSDGSDGSDGSDGSDGSDGDS
Output file:
FASFGGDSGDS
I just want to print out the read from position 5 until position 15 from the data.
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Input:
HS04636 PROGRAM source 836 7001 + ID=g1
HS04636 PROGRAM beginner 836 7001 + ID=g1.t1;Parent=g1
HS04636 PROGRAM position 836 836 + Parent=g1.t1
HS04636 PROGRAM type 836 1017 + Parent=g1.t1
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One question.
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LEARN ABOUT OPENSOLARIS
file-roller
file-roller(1) User Commands file-roller(1) NAME
file-roller - create, view, modify, or unpack an archive SYNOPSIS
file-roller [--add] [--add-to=archive] [--default-dir=folder] [--extract] [--extract-here] [--extract-to=folder] [--force] [gnome-std- options] DESCRIPTION
The File Roller application enables you to create, view, modify, or unpack an archive. An archive is a file that acts as a container for other files. An archive can contain many files, folders, and subfolders, usually in compressed form. OPTIONS
The following options are supported: -d, --add Ask for the name of the archive, then add the files, then quit the application. -a, --add-to=archive Add files to the specified archive, then quit the application. --default-dir=folder Specify the default folder for the --add and --extract options. -f, --extract Ask for the name of the destination folder, then extract the files, then quit the application. -h, --extract-here Extract archives using the archive name as destination folder and quit the program. -e, --extract-to=folder Extract archives to the specified folder, then quit the application. --force Create the destination folder without asking for confirmation. gnome-std-options Standard options available for use with most GNOME applications. See gnome-std-options(5) for more infor- mation. EXAMPLES
Example 1: Unpacking an Archive example% file-roller --extract archive EXIT STATUS
The following exit values are returned: 0 Application exited successfully >0 Application exited with failure FILES
The following files are used by this application: /usr/bin/file-roller Executable for File Roller application. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +-----------------------------+-----------------------------+ |Availability |SUNW | +-----------------------------+-----------------------------+ |Interface stability |Volatile | +-----------------------------+-----------------------------+ SEE ALSO
File Roller Manual ar(1), tar(1), unzip(1), zip(1), attributes(5), gnome-std-options(5) NOTES
Written by Laszlo Kovacs, Sun Microsystems Inc., 2003, 2004, 2007. SunOS 5.11 08 Nov 2007 file-roller(1)