Thank you for your answer. I corrected the code. But the first character of each sequence is not printing. I got the output like this
My desired output is
Last edited by rahim42; 12-26-2013 at 10:02 AM..
Reason: mistake
Hi,
I want to extract a part of filename and pass it as a parameter to one of the scripts. Could someone help.
File name:-
NLL_NAM_XXXXX.XXXXXXX_1_1.txt.
Here i have to extract only XXXXX.XXXXXXX and the position will be constant. that means that i have to extract some n characters from... (6 Replies)
Hi there,
I'm having some problem with UNIX scripting (ksh), perhaps somebody can help me out?
For example:
------------
Sample content of my log file (text file):
--------------------------------------
File1: ....
info_1 ...
info_2 ...
info_3 ...
File2: ....
info_1 ...
info_2 ...... (10 Replies)
I need to extract the following lines from this text and put it in different files.
From xxxx@gmail.com Thu Jun 10 21:15:46 2010
Return-Path: <xxxxx@gmail.com>
X-Original-To: xxx@localhost
Delivered-To:xxxx@localhost
Received: from ubuntu (localhost )
by ubuntu (Postfix) with ESMTP... (11 Replies)
Hi,
I have a file with more than 28000 records and it looks like below..
>mm10_refflat_ABCD range=chr1:1234567-2345678
tgtgcacactacacatgactagtacatgactagac....so on
>mm10_refflat_BCD range=chr1:3234567-4545678...
tgtgcacactacacatgactagtatgtgcacactacacatgactagta
.
.
.
.
.
so on
... (2 Replies)
I have a fastq file from small RNA sequencing with sequence lengths between 15 - 30. I wanted to filter sequence lengths between 21-25 and write to another fastq file. how can i do that? (4 Replies)
Hello All,
I need to extract part of a file into a new file
My file is
Define schema xxxxxx
Insert into table
(
a
,b
,c
,d
)
values
(
1,
2,
3, (15 Replies)
Hello to all,
I would like to search sequences of bytes inside big binary file.
The bin file contains blocks of information, each block begins is estructured as follow:
1- Each block begins with the hex 32 (1 byte) and ends with FF. After the FF of the last block, it follows 33.
2- Next... (59 Replies)
I have two files. File1 is shown below.
>153L:B|PDBID|CHAIN|SEQUENCE
RTDCYGNVNRIDTTGASCKTAKPEGLSYCGVSASKKIAERDLQAMDRYKTIIKKVGEKLCVEPAVIAGIISRESHAGKVL
KNGWGDRGNGFGLMQVDKRSHKPQGTWNGEVHITQGTTILINFIKTIQKKFPSWTKDQQLKGGISAYNAGAGNVRSYARM
DIGTTHDDYANDVVARAQYYKQHGY
>16VP:A|PDBID|CHAIN|SEQUENCE... (7 Replies)
I need to save part of a file to a different one, start and end offset bytes are provided by two counters in long format. If the difference is big, how should I do it to prevent buffer overflow in java? (7 Replies)
I have a variable and assigned the following values
***XYZ_201519_20150929140642_20150929140644_211_0_0_211
I need to read this variable from backward and stop read when I get first underscore (_)
In this scenario I should get 211
Thanks
Kris (3 Replies)
Discussion started by: mkris
3 Replies
LEARN ABOUT CENTOS
paps
PAPS(1) General Commands Manual PAPS(1)NAME
paps - UTF-8 to PostScript converter using Pango
SYNOPSIS
paps [options] files...
DESCRIPTION
paps reads a UTF-8 encoded file and generates a PostScript language rendering of the file. The rendering is done by creating outline curves
through the pango ft2 backend.
OPTIONS
These programs follow the usual GNU command line syntax, with long options starting with two dashes (`-'). A summary of options is
included below.
--landscape
Landscape output. Default is portrait.
--columns=cl
Number of columns output. Default is 1.
--font=desc
Set the font description. Default is Monospace 12.
--rtl Do rtl layout.
--paper ps
Choose paper size. Known paper sizes are legal, letter, a4. Default is A4.
--bottom-margin=bm
Set bottom margin in postscript points (1/72 inch). Default is 36.
--top-margin=tm
Set top margin. Default is 36.
--left-margin=lm
Set left margin. Default is 36.
--right-margin=rm
Set right margin. Default is 36.
--help Show summary of options.
--header
Draw page header for each page.
--markup
Interpret the text as pango markup.
--encoding=ENCODING
Assume the documentation encoding is ENCODING.
--lpi Set the lines per inch. This determines the line spacing.
--cpi Set the characters per inch. This is an alternative method of specifying the font size.
--stretch-chars
Indicates that characters should be stretched in the y-direction to fill up their vertical space. This is similar to the texttops
behaviour.
AUTHOR
paps was written by Dov Grobgeld <dov.grobgeld@gmail.com>.
This manual page was written by Lior Kaplan <kaplan@debian.org>, for the Debian project (but may be used by others).
April 17, 2006 PAPS(1)