I want to grep a range of numbers in a log file. My log file looks like this:
20050807070609Z;blah blah
That is a combination of yr,month,date,hours,minutes,seconds.
I want to search in the log file events that happened between a particular time.
like between 20050807070000 to 20050822070000... (1 Reply)
Hi im new to unix and need to find a way to grep the top 5 numbers in a file and put them into another file. For example my file looks like this
abcdef 50000
abcdef 45000
abcdef 40000
abcdef 35000
abcdef 30000
abcdef 25000
abcdef 20000
abcdef 15000
abcdef 10000
and so on...
How can... (1 Reply)
Howdy experts,
We have some ranges of number which belongs to particual group as below.
GroupNo StartRange EndRange
Group0125 935300 935399
Group2006 935400 935476
937430 937459
Group0324 935477 935549
... (6 Replies)
if the column1 and 2 in both files has same key (for example "a" and "a1") compare each first key value(a1 of a) of input2 (for example 1-4 or 65-69 not 70-100 or 44-40 etc) with all the values in input1.
if the range of first key value in input2 is outof range in input1 values named it as out... (54 Replies)
Hello,
I have a column where there are values from 1 to 150.
I want to get the frequency of values in the following ranges:
1-5
6-10
11-15
....
....
....
146-150
How can I do this in a for loop?
Thanks,
Guss (1 Reply)
Dear Friends,
I want to know how to grep for the lines that has a number between given range(start and end).
I have tried the following sed command.
sed -n -e '/20030101011442/,/20030101035519/p'
However this requires both start and end to be part of the content being grepped. However... (4 Replies)
I am trying to extract specific information from a large *.sam file (it's originally 28Gb).
I want to extract all lines that are on chr3 somewhere in the range of 112,937,439-113,437,438.
Here is a sample line from my file so you can get a feel for what each line looks like:
seq.4 0 ... (8 Replies)
Hi
I am getting an argument which specifies the range of numbers. eg: 7-15
Is there a way that i can easily (avoiding loop) print the range of number between and including the specified above.
The above example should translate to 7,8,9,10,11,12,13,14,15 (3 Replies)
Discussion started by: tostay2003
3 Replies
LEARN ABOUT DEBIAN
bio::tools::match
Bio::Tools::Match(3pm) User Contributed Perl Documentation Bio::Tools::Match(3pm)NAME
Bio::Tools::Match - Parses output from Transfac's match(TM)
SYNOPSIS
use strict;
use Bio::Tools::Match;
my $parser = Bio::Tools::Match->new(-file => "match.out");
while (my $feat = $parser->next_result) {
my $start = $feat->start;
my $end = $feat->end;
my $core_score = $feat->score;
my $matrix_score = ($feat->annotation->get_Annotations('matrix_score'))[0]->value;
my $matrix_id = ($feat->annotation->get_Annotations('matrix_id'))[0]->value;
}
DESCRIPTION
This module is used to parse the output from Transfac's match(TM) program. It doesn't support the histogram output of match.
Each result is a Bio::SeqFeature::Annotated representing a single matrix match.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Sendu Bala
Email bix@sendu.me.uk
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Tools::Match->new();
Function: Builds a new Bio::Tools::Match object
Returns : Bio::Tools::Match
Args : -file (or -fh) should contain the contents of a standard match output
next_result
Title : next_result
Usage : $result = $obj->next_result();
Function: Returns the next result available from the input, or undef if there
are no more results.
Returns : Bio::SeqFeature::Annotated object. Features are annotated with tags
for 'matrix_score', 'matrix_id' and a 'predicted' tag.
Args : none
perl v5.14.2 2012-03-02 Bio::Tools::Match(3pm)