Sponsored Content
Top Forums Shell Programming and Scripting Get string of sequence from other file Post 302862923 by narachaid on Friday 11th of October 2013 04:05:42 PM
Old 10-11-2013
Thanks guys!
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Adding a sequence string to a file

I have a pipe delimited file I need to add a sequence number to in the third field. The record fields will be variable length, so I have to parse for the second pipe. Another requirement is that the sequence number must be unique to all records in the file and subsequent files created, so the... (5 Replies)
Discussion started by: MrPeabody
5 Replies

2. UNIX for Dummies Questions & Answers

string replacement in a sequence of characters

Hi All, I have a string "TBM630300000000020080506094041000003818".I want to replace the last nine digits with another string stored in a variabe called "count".The variabe is also having nine digits.Could any one please help me on this how to accomplish.I need a detail syntax(not in the... (3 Replies)
Discussion started by: raoscb
3 Replies

3. UNIX for Dummies Questions & Answers

cmd sequence to find & cut out a specific string

A developer of mine has this requirement - I couldn't tell her quickly how to do it with UNIX commands or a quick script so she's writing a quick program to do it - but that got my curiousity up and thought I'd ask here for advice. In a text file, there are some records (about half of them)... (4 Replies)
Discussion started by: LisaS
4 Replies

4. Shell Programming and Scripting

Renaming a file use another file as a sequence calling a shl

have this shl that will FTP a file from the a directory in windows to UNIX, It get the name of the file stored in this variable $UpLoadFileName then put in the local directory LocalDir="${MPATH}/xxxxx/dat_files" that part seems to be working, but then I need to take that file and rename, I am using... (3 Replies)
Discussion started by: rechever
3 Replies

5. Shell Programming and Scripting

Adding sequence to the file

How do I add the sequence number to the file? I have a file seperated by commas. appusage,243,jsdgh,798 appusage,876,0989,900 . . appusage,82374,ajfgdh,9284 The output would be as below 1,appusage,243,jsdgh,798 2,appusage,876,0989,900 . . 100,appusage,876,0989,900 (5 Replies)
Discussion started by: smee
5 Replies

6. UNIX for Dummies Questions & Answers

Help Parsing Sequence File

Hi Everyone, I am new in the world of UNIX and Shell scripting. I am working with a sequence file that looks like this: >contig00001 length=128 numreads=2 aTGTGCTGGgTGGGTGCCTGTTgCCccATGCTCCAGTtCAGGATTtCAGGCAttCTCATG TCCAGCATTTCTATTTAATCCTGCTGCTGGACTTGGGTGGtCTCAGTCtGGGAAGTGAGC tGTCTGTG... (8 Replies)
Discussion started by: Fahmida
8 Replies

7. Shell Programming and Scripting

First number sequence from string

Hi, I have a string like: DBMS stats (Number Used | Percentage of total): 10 | 1.00% I have a sed command to extract numbers from this string: sed "s///g;s/^$/-1/;" Output: 10100 However what I want the sed command to return is only the first number(regardless of its size) i.e.... (3 Replies)
Discussion started by: mccartj5
3 Replies

8. Shell Programming and Scripting

find sequence of 13 digits in file

I need to extract all sequences of thirteen digits in a file, e.g. 4384976350232, and at the same time not extract sequences with 14 or more digits. How do I do that using sed, awk or something built into bash? (8 Replies)
Discussion started by: locoroco
8 Replies

9. Shell Programming and Scripting

find common entries and match the number with long sequence and cut that sequence in output

Hi all, I have a file like this ID 3BP5L_HUMAN Reviewed; 393 AA. AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3; DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot. DT 05-JUL-2004, sequence version 1. DT 05-SEP-2012, entry version 71. FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies

10. Shell Programming and Scripting

Inserting IDs from a text file into a sequence alignment file

Hi, I have one file with one column and several hundred entries File1: NA1 NA2 NA3And now I need to run a command within a mapping aligner tool to insert these sample names into a sequence alignment file (SAM) such that they look like this @RG ID:Library1 SM:NA1 PL:Illumina ... (7 Replies)
Discussion started by: nans
7 Replies
JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [ options ] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -jn m Join on the mth field of file n. If n is missing, use the mth field in each file. -o list Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1) BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. 7th Edition April 29, 1985 JOIN(1)
All times are GMT -4. The time now is 02:35 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy