Sponsored Content
Top Forums UNIX for Dummies Questions & Answers Extracting 22-character strings from text using sed/awk? Post 302854535 by Twinklefingers on Tuesday 17th of September 2013 03:54:54 PM
Old 09-17-2013
@wisecracker

Input:

Code:
TCAAATTTTATGGCATAGTAAAGATAACAAAAGAAGTGATCGAATTTATTCTTTAGATAT
TCAACCATATCCAAATTATTATAGTGTTAAAAAATTAAATAGGAAATATGAATTGTTTAT
CAAATATTTAAAAGAAAAAGGAAAAATAGAATGTAATAAATTCGACACTTTAGAAGAAAA
ACAAAAAATTATAAATGATTCAACATTGCCCTCAAATAATAATTATAATAATAGTAGTAA
TAATAATAATAATAATAATAAATATGAAACATTAAAATTAGATAAAGAACTGAATCAAGG
AAATGAGGATAACATTATAAAGACGGTAATTGGGAATAACACGGAAGTTAGTAATAATAA
CTTATTAGATGATACAAACAATAAATTAAACGAAATAAAAACAAATACATCTACGGAAGA
TCACCAAGAACACAATTTAGTAAATAAAAAAAACGAAACGAATAGTTCATCTAATGACAA
TATTTCACATAATAAAACACCAATGCAATCAAATAAATTACTTACATCATTACAAGATGA
TAAAACAAAAAAAAAACCTATCAAATTTAATATAGCTACATGTGGTGCTGACGAATTCGT
ACATTTGTGGAGAATATTTATAAAAGATGATATTTCAATTAAATGCTTAGGTAGATTTAT
AGGTCATAGTGGTGAAATAAATTGTGTTCGTTTTAACAAAAATGGTAGATATATAGCAAG
TGGGGGAGAAGATAAATTTTTATATATATGGGAAAAAAGTAAAAAACCAAAAAATATACC
ATTAGGTTATGATATAAGCTTTTTAGATTATAAAGAATGGTGGAATGTCGTAGGGTCTTT
CAGATGTAGTGGTGTAATAAATAGTATTATTTGGTCAAACAATGATACCTTATATGTAGC

Output:

Code:
L01883730:dir$ sh 22mers_17Sept13.sh 

TCAAATTTTATGGCATAGTAAAGATAACAAAAGAAGTGATCGAATTTATTCTTTAGATAT

TTTAGATAT

Thank you!
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

extracting a set of strings from a text file

i have textfiles that contain a series of lines that look like this: string0 .................................................... column3a column4a string1**384y0439 ..................................... column3b column4b... (2 Replies)
Discussion started by: Deanne
2 Replies

2. Shell Programming and Scripting

Extracting text between two strings, first instance only

There are a lot of ways to extract text from between two strings, but what if those strings occur multiple times and you only want the text from the first two strings? I can't seem to find anything to work here. I'm using sed to process the text after it's extracted, so I prefer a sed answer, but... (4 Replies)
Discussion started by: fubaya
4 Replies

3. UNIX for Dummies Questions & Answers

Using awk/sed to extract text between Strings

Dear Unix Gurus, I've got a data file with a few hundred lines (see truncated sample)... BEGIN_SCAN1 TASK_NAME=LA48 PDD Profiles PROGRAM=ArrayScan 1.00 21.220E+00 2.00 21.280E+00 END_DATA END_SCAN1 BEGIN_SCAN2 TASK_NAME=LA48 PDD Profiles 194.00 2.1870E+00 ... (5 Replies)
Discussion started by: tintin72
5 Replies

4. UNIX for Advanced & Expert Users

bash/grep/awk/sed: How to extract every appearance of text between two specific strings

I have a text wich looks like this: clid=2 cid=6 client_database_id=35 client_nickname=Peter client_type=0|clid=3 cid=22 client_database_id=57 client_nickname=Paul client_type=0|clid=5 cid=22 client_database_id=7 client_nickname=Mary client_type=0|clid=6 cid=22 client_database_id=6... (3 Replies)
Discussion started by: Pioneer1976
3 Replies

5. Shell Programming and Scripting

replace two character strings by two variables with sed command

Hello, I want to writte a script that replace two character strings by two variables with the command sed butmy solution doesn't work. I'm written this: sed "s/TTFactivevent/$TTFav/g && s/switchSLL/$SLL/g" templatefile. I want to replace TTFactivevent by the variable $TTFav, that is a... (4 Replies)
Discussion started by: POPO10
4 Replies

6. Shell Programming and Scripting

Extracting text between two strings

Hi, I've looked at a few existing posts on this, but they don't seem to work for my inputs. I have a text file where I want to extract all the text between two strings, every time that occurs. Eg my input file is Anna said that she would fetch the bucket. Anna and Ben moved the bucket.... (9 Replies)
Discussion started by: JamesForeman
9 Replies

7. Shell Programming and Scripting

any savant ? using AWK/SED to remove newline character between two strings : conditional removal

I'd like to remove (do a pattern or precise replacement - this I can handle in SED using Regex ) ---AFTER THE 1ST Occurrence ( i.e. on the 2nd occurrence - from the 2nd to fourth occurance ) of a specific string : type 1 -- After the 1st occurrence of 1 string1 till the 1st occurrence of... (4 Replies)
Discussion started by: sieger007
4 Replies

8. Shell Programming and Scripting

Extracting text between two constant strings

Hi All, I have a file whose common patter is like this: .I 1 .U 87049087 .S Some text here too .M This is a text .T Some another text here .P Name of the book .W Some lines of more text. This text needs to be extracted. .A more text goes here too .I 2 (2 Replies)
Discussion started by: shoaibjameel123
2 Replies

9. Shell Programming and Scripting

Extracting text between two strings, multiple instances

Hi experts, Ive got a text file which has the following text which will occur in this format at least one time: +=========================>> Some stuff that evreryone should knnow other stufsjdokajkajokajda aijhjajcdjajcisajcqsqdqwdqad <<=========================+ It is likely that... (8 Replies)
Discussion started by: martin0852
8 Replies

10. UNIX for Beginners Questions & Answers

Extracting strings at various positions of text file

Hi Team - I hope everyone has been well! I export a file from one of our source systems that gives me more information than I need. The way the file outputs, I need to extract certain strings at different positions on the file and echo them to another file. I can do this in batch easily,... (2 Replies)
Discussion started by: SIMMS7400
2 Replies
IRSEND(1)							   User Commands							 IRSEND(1)

NAME
irsend - basic LIRC program to send infra-red commands SYNOPSIS
irsend [options] DIRECTIVE REMOTE CODE [CODE...] DESCRIPTION
Asks the lircd daemon to send one or more CIR (Consumer Infra-Red) commands. This is intended for remote control of electronic devices such as TV boxes, HiFi sets, etc. DIRECTIVE can be: SEND_ONCE - send CODE [CODE ...] once SEND_START - start repeating CODE SEND_STOP - stop repeating CODE LIST - list configured remote items SET_TRANSMITTERS - set transmitters NUM [NUM ...] SIMULATE - simulate IR event REMOTE is the name of a remote, as described in the lircd configuration file. CODE is the name of a remote control key of REMOTE, as it appears in the lircd configuration file. NUM is the transmitter number of the hardware device. For the LIST DIRECTIVE, REMOTE and/or CODE can be empty: LIST "" "" - list all configured remote names LIST REMOTE "" - list all codes of REMOTE LIST REMOTE CODE - list only CODE of REMOTE The SIMULATE command only works if it has been explicitly enabled in lircd. -h --help display usage summary -v --version display version -d --device use given lircd socket [/var/run/lirc/lircd] -a --address=host[:port] connect to lircd at this address -# --count=n send command n times EXAMPLES
irsend LIST DenonTuner "" irsend SEND_ONCE DenonTuner PROG-SCAN irsend SEND_ONCE OnkyoAmpli VOL-UP VOL-UP VOL-UP VOL-UP irsend SEND_START OnkyoAmpli VOL-DOWN ; sleep 3 irsend SEND_STOP OnkyoAmpli VOL-DOWN irsend SET_TRANSMITTERS 1 irsend SET_TRANSMITTERS 1 3 4 irsend SIMULATE "0000000000000476 00 OK TECHNISAT_ST3004S" FILES
/etc/lirc/lircd.conf Default lircd configuration file. It should contain all the remotes, their infra-red codes and the corresponding timing and wave- form details. DIAGNOSTICS
If lircd is not running (or /var/run/lirc/lircd lacks write permissions) irsend aborts with the following diagnostics: "irsend: could not connect to socket" "irsend: Connection refused" (or "Permission denied"). SEE ALSO
The documentation for lirc is maintained as html pages. They are located under html/ in the documentation directory. lircd(8), mode2(1), smode2(1), xmode2(1), irrecord(1), irw(1), http://www.lirc.org. irsend 0.9.0-pre1 October 2010 IRSEND(1)
All times are GMT -4. The time now is 10:56 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy