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Full Discussion: Extracting 22-character strings from text using sed/awk?
Top Forums UNIX for Dummies Questions & Answers Extracting 22-character strings from text using sed/awk? Post 302854535 by Twinklefingers on Tuesday 17th of September 2013 03:54:54 PM
Old 09-17-2013
@wisecracker

Input:

Code:
TCAAATTTTATGGCATAGTAAAGATAACAAAAGAAGTGATCGAATTTATTCTTTAGATAT
TCAACCATATCCAAATTATTATAGTGTTAAAAAATTAAATAGGAAATATGAATTGTTTAT
CAAATATTTAAAAGAAAAAGGAAAAATAGAATGTAATAAATTCGACACTTTAGAAGAAAA
ACAAAAAATTATAAATGATTCAACATTGCCCTCAAATAATAATTATAATAATAGTAGTAA
TAATAATAATAATAATAATAAATATGAAACATTAAAATTAGATAAAGAACTGAATCAAGG
AAATGAGGATAACATTATAAAGACGGTAATTGGGAATAACACGGAAGTTAGTAATAATAA
CTTATTAGATGATACAAACAATAAATTAAACGAAATAAAAACAAATACATCTACGGAAGA
TCACCAAGAACACAATTTAGTAAATAAAAAAAACGAAACGAATAGTTCATCTAATGACAA
TATTTCACATAATAAAACACCAATGCAATCAAATAAATTACTTACATCATTACAAGATGA
TAAAACAAAAAAAAAACCTATCAAATTTAATATAGCTACATGTGGTGCTGACGAATTCGT
ACATTTGTGGAGAATATTTATAAAAGATGATATTTCAATTAAATGCTTAGGTAGATTTAT
AGGTCATAGTGGTGAAATAAATTGTGTTCGTTTTAACAAAAATGGTAGATATATAGCAAG
TGGGGGAGAAGATAAATTTTTATATATATGGGAAAAAAGTAAAAAACCAAAAAATATACC
ATTAGGTTATGATATAAGCTTTTTAGATTATAAAGAATGGTGGAATGTCGTAGGGTCTTT
CAGATGTAGTGGTGTAATAAATAGTATTATTTGGTCAAACAATGATACCTTATATGTAGC

Output:

Code:
L01883730:dir$ sh 22mers_17Sept13.sh 

TCAAATTTTATGGCATAGTAAAGATAACAAAAGAAGTGATCGAATTTATTCTTTAGATAT

TTTAGATAT

Thank you!
 

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LEARN ABOUT CENTOS

locale::codes::langext

Locale::Codes::LangExt(3)				User Contributed Perl Documentation				 Locale::Codes::LangExt(3)

NAME

       Locale::Codes::LangExt - standard codes for language extension identification

SYNOPSIS

	  use Locale::Codes::LangExt;

	  $lext = code2langext('acm');		       # $lext gets 'Mesopotamian Arabic'
	  $code = langext2code('Mesopotamian Arabic'); # $code gets 'acm'

	  @codes   = all_langext_codes();
	  @names   = all_langext_names();

DESCRIPTION

       The "Locale::Codes::LangExt" module provides access to standard codes used for identifying language extensions, such as those as defined in
       the IANA language registry.

       Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default IANA language
       registry codes will be used.

SUPPORTED CODE SETS

       There are several different code sets you can use for identifying language extensions. A code set may be specified using either a name, or
       a constant that is automatically exported by this module.

       For example, the two are equivalent:

	  $lext = code2langext('acm','alpha');
	  $lext = code2langext('acm',LOCALE_LANGEXT_ALPHA);

       The codesets currently supported are:

       alpha
	   This is the set of three-letter (lowercase) codes from the IANA language registry, such as 'acm' for Mesopotamian Arabic.

	   This is the default code set.

ROUTINES

       code2langext ( CODE [,CODESET] )
       langext2code ( NAME [,CODESET] )
       langext_code2code ( CODE ,CODESET ,CODESET2 )
       all_langext_codes ( [CODESET] )
       all_langext_names ( [CODESET] )
       Locale::Codes::LangExt::rename_langext  ( CODE ,NEW_NAME [,CODESET] )
       Locale::Codes::LangExt::add_langext  ( CODE ,NAME [,CODESET] )
       Locale::Codes::LangExt::delete_langext  ( CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_alias  ( NAME ,NEW_NAME )
       Locale::Codes::LangExt::delete_langext_alias  ( NAME )
       Locale::Codes::LangExt::rename_langext_code  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::add_langext_code_alias  ( CODE ,NEW_CODE [,CODESET] )
       Locale::Codes::LangExt::delete_langext_code_alias  ( CODE [,CODESET] )
	   These routines are all documented in the Locale::Codes::API man page.

SEE ALSO

       Locale::Codes
	   The Locale-Codes distribution.

       Locale::Codes::API
	   The list of functions supported by this module.

       http://www.iana.org/assignments/language-subtag-registry
	   The IANA language subtag registry.

AUTHOR

       See Locale::Codes for full author history.

       Currently maintained by Sullivan Beck (sbeck@cpan.org).

COPYRIGHT

	  Copyright (c) 2011-2013 Sullivan Beck

       This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.

perl v5.16.3							    2013-02-27						 Locale::Codes::LangExt(3)
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