09-12-2013
Right .... I wanted to use this on Solaris which does not have GAWK and thus cannot use strtonum function .... thx
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1. Shell Programming and Scripting
Hi I want to incremental add hex decimal number to a particula field in file
eg: addr =123 dept1=0
addr = 345 dept2 =1
addr2 = 124 dept3 =2
.
.
.
.
.
.
addr3 =567 dept15 =f
Is there any command which add... (8 Replies)
Discussion started by: diddi_linux
8 Replies
2. Shell Programming and Scripting
Hi,
I have a data as follow:
1 400
2 239
3 871
4 219
5 543
6 ...
7 ...
.. ...
.. ...
99 818
100 991
I want to replace the sequence number (column 1) that start from 150. The output should like this:
150 400
151 239 (3 Replies)
Discussion started by: nica
3 Replies
3. Shell Programming and Scripting
Friends, I am looking for a small script which generates HEX sequence. Input to the script is starting hex number - Group ID and number of members a group should have and total groups.
e.g: Here we are generating 2 groups with 4 Members each starting with hex 036A.
Output:
Group ID 036A,... (5 Replies)
Discussion started by: dynamax
5 Replies
4. Shell Programming and Scripting
Guys, I am looking for a small script which generates HEX sequence. Input to the script is starting hex number - Group ID and number of members in a group and total groups.
e.g: we are generating 2 groups with 4 Members each starting with hex number 036A. I should get o/p in following format.
... (5 Replies)
Discussion started by: dynamax
5 Replies
5. Shell Programming and Scripting
Is it possible by using awk to remove leading zeros for a hex number?
ex:
0000000011179E0A -> 11179E0A
Thank you! (4 Replies)
Discussion started by: carloszhang
4 Replies
6. Shell Programming and Scripting
$ awk 'BEGIN{ pat111=0x1000000002E3E02; snBegin=0x1000000002E3E01; if (pat111<=snBegin) printf "a\n"}'
a
Result is not correct.
Looks like the number is too big.
Any idea?
Thx!
Please use code tags <- click the link! (2 Replies)
Discussion started by: carloszhang
2 Replies
7. Shell Programming and Scripting
Dear Perl users,
I need your help to solve my problem below.
I want to print the sequence number without missing number within the range.
E.g. my sequence number :
1 2 3 4 5 6 7 8 11 12 13 14
my desired output:
1 -8 , 11-14
my code below but still problem with the result:
1 - 14
1 -... (2 Replies)
Discussion started by: mandai
2 Replies
8. Shell Programming and Scripting
Am using unix aix KSH...
I have the files called
MMRR0106.DAT
MMRR0206.DAT
MMRR0406.DAT
MMRR0506.DAT
MMRR0806.DAT
....
...
MMRR3006.DAT
MMRR0207.DAT
These files are in one dircetory /venky ?
I want the output like this ?
Missing files are :
MMRR0306.DAT
MMRR0606.DAT... (7 Replies)
Discussion started by: Venkatesh1
7 Replies
9. Shell Programming and Scripting
Hi all,
I have a file like this
ID 3BP5L_HUMAN Reviewed; 393 AA.
AC Q7L8J4; Q96FI5; Q9BQH8; Q9C0E3;
DT 05-FEB-2008, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 05-SEP-2012, entry version 71.
FT COILED 59 140 ... (1 Reply)
Discussion started by: manigrover
1 Replies
10. Shell Programming and Scripting
Hi,
sry for poor english
I have a group of hex number as : 4D40:4D42
I want so split this group in a list as :
4D40,4D41,4D42
i don't know how i can do this in ksh
Thanks (5 Replies)
Discussion started by: jocazh
5 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)
NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS
-p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)
SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)
AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)