Can some body tell me how to print number of line from a particular file, with sed. ?
Input file format
AAAA
BBBB
CCCC
SDFFF
DDDD
DDDD
Command to print line 2 and 3 ?
BBBB
CCCC
And also please tell me how to assign column sum to variable.
I user the following command it... (1 Reply)
Hi,
I want to print only lines in between two strings and not the strings using awk.
Eg:
OUTPUT
top 2
bottom 1
left 0
right 0
page 66
END
I want to print into a new file only
top 2
bottom 1
left 0... (4 Replies)
Ok so I can use awk to match a pattern and print the whole line with print $0. Is there any way to just tell awk to print every line of output when the pattern matches?
I'm having it wait for the word error and then print that entire line. But what I actually need to see is all the following... (9 Replies)
I have a file1.txt
file1.txt
F-120009210","Felix","U-M-F-F-F-","white","yes","no","U-M-F-F-F-","Bristol","RI","true"
F-120009213","Fluffy","U-F-","white","yes","no","M-F-","Warwick","RI","true"
U-120009217","Lity","U-M-","grey","yes","yes","","Fall River","MA","true"... (4 Replies)
I have a output log file, that I want to extract some temperature measurement data.
I want to AWK on the words "show chassis environment" in the original file, and extract that entire line, and then the 3rd to 10th lines after the one I AWK'd, into a seperate output file.
Here is an example... (3 Replies)
im using the code below to monitor a file:
gawk '{
a += gsub("(^| )accepted( |$)", "&")
a += gsub("(^| )open database( |$)", "&")
} END {
for (i in a)
printf("%s=%s\n", i, a)
}' /var/log/syslog
the code is searching the syslog file for the string "accepted" and "open... (2 Replies)
URGENT HELP IS NEEDED!!
I am looking to move matching lines (01 - 07) from File1 and 77 tab the matching string from File2, to File3.txt. I am almost done but
- Currently, script is not printing lines to File3.txt in order.
- Also the matching lines are not moving out of File1.txt
... (1 Reply)
from the CLI on a Mac, if you type networksetup -listallnetworkservices then you get results in a multi-line paragraph that look something like this:
networksetup -listallnetworkservices
An asterisk (*) denotes that a network service is disabled.
Wi-Fi
Display Ethernet
Bluetooth DUN... (7 Replies)
Discussion started by: hungryd
7 Replies
LEARN ABOUT DEBIAN
bio::updateableseqi
Bio::UpdateableSeqI(3pm) User Contributed Perl Documentation Bio::UpdateableSeqI(3pm)NAME
Bio::UpdateableSeqI - Descendant of Bio::SeqI that allows updates
SYNOPSIS
See Bio::SeqI for most of the documentation. See the documentation of the methods for further details.
DESCRIPTION
Bio::UpdateableSeqI is an interface for Sequence objects which are expected to allow users to perform basic editing functions
(update/delete) on their component SeqFeatures.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - David Block
Email dblock@gene.pbi.nrc.ca
CONTRIBUTORS
Ewan Birney forced me to this...
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
delete_feature
Title : delete_feature
Usage : my $orphanlist=$self->delete_feature($feature,$transcript,$gene);
Function: deletes the specified $feature from the given transcript, if $transcript is sent and exists and $feature is a feature of $transcript,
or from $gene if the $feature is a feature of $gene, or from $self if $transcript and $gene are not sent. Keeps track of the features
of the $gene object that may be left as orphans and returns them as a listref.
Example : I want to delete transcript 'abc' of gene 'def', with three exons, leaving only transcript 'ghi' with two exons.
This will leave exons 1 and 3 part of 'ghi', but exon 2 will become an orphan.
my $orphanlist=$seq->delete_feature($transcript{'abc'},undef,$gene{'def'});
$orphanlist is a reference to a list containing $exon{'2'};
Returns : a listref of orphaned features after the deletion of $feature (optional)
Args : $feature - the feature to be deleted
$transcript - the transcript containing the $feature, so that a $feature can be removed from only one transcript when there are multiple
transcripts in a gene.
$gene - the gene containing the $transcript and/or the $feature
perl v5.14.2 2012-03-02 Bio::UpdateableSeqI(3pm)