so i have been trying to learn how to manipulate text on my own and have gotten stumped...
let's say i have a text file that says (highly simplified):
people ordinary
How would swap the order of the words..
I know i need to use sed and some kind of back reference but cannot make it... (2 Replies)
I a file with log entries... I want to sort it so that the last line in the file is first and the first line is last..
eg.
Sample file
1
h
a
f
8
6
After sort should look like
6
8
f
a
h
1 (11 Replies)
I need to sort the particular column only in reverse order how i can give it..
if i give the -r option the whole file is getting sorted in reverse order.
1st 2nd col 3rd
C col 4th col 5th col
-------------------------------------------
C... (7 Replies)
command/script(apart from awk) to print the fields in reverse order
that is last field has to come first and so on and first field has to go last
Input
store-id date sale
.............
.............
... (3 Replies)
Hi,
I want to print the item in reverse order such that the output would look like
00 50 50 23 40 22 02 96
Below is the input:
00 05 05 32 04 22 20 69
Video tutorial on how to use code tags in The UNIX and Linux Forums. (5 Replies)
Hello,
I have a large database of words and would like them sorted in reverse order i.e. from the end up.
An example will make this clear:
I have tried to write a program in Perl which basically takes the string from the end and tries to sort from that end but it does not seem... (5 Replies)
I have a unix script that outputs a summary file to the mac desktop.
The file is called summary.txt
I am trying to configure such so that the summary.txt file lists the content contained within such in reverse sort order.
I have used sort -r but it does not seem to work.
I would be... (8 Replies)
Discussion started by: Braveheart
8 Replies
LEARN ABOUT DEBIAN
re-pcr
RE-PCR(1) General Commands Manual RE-PCR(1)NAME
re-PCR -- Find sequence tagged sites (STS) in DNA sequences
SYNOPSIS
re-PCR [-hV] -p hash-file [-g gaps] [-n mism] [-lq] [primer ...]
re-PCR [-hV] -P hash-file [-g gaps] [-n mism] [-l] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [primers-file ...]
re-PCR [-hV] -s hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-o outfile] [-r+|-] [left right lo[-hi] [...]]
re-PCR [-hV] -S hash-file [-g gaps] [-n mism] [-lq] [-m margin] [-O+|-] [-C batchcnt] [-o outfile] [-r+|-] [stsfile ...]
DESCRIPTION
Implements reverse searching (called Reverse e-PCR) to make it feasible to search the human genome sequence and other large genomes by per-
forming STS and primer searches.
OPTIONS -p=hash-file
Perform primer lookup using hash-file
-P=hash-file
Perform primer lookup using hash-file
-s=hash-file
Perform STS lookup using hash-file
-S=hash-file
Perform STS lookup using hash-file
-n=mism Set max allowed mismatches per primer for lookup
-g=gaps Set max allowed indels per primer for lookup
-m=margin Set variability for STS size for lookup
-l Use presize alignments (only if gaps>0)
-G Print alignments in comments
-d=min-max
Set default STS size
-r=+|- Enable/disable reverse STS lookup
-O=+|- Enable/disable syscall optimisation
-C=batchcnt
Set number of STSes per batch
-o=outfile
Set output file name
-q Quiet (no progress indicator)
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and fahash(1)SEE ALSO
/usr/share/doc/ncbi-epcr/README.txt
bioperl(1), e-pcr(1), famap(1) and fahash(1)AUTHORS
This manual page was written by Andreas Tille <tille@debian.org> for the Debian system (but may be used by others). Permission is granted
to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 any later version published by
the Free Software Foundation.
On Debian systems, the complete text of the GNU General Public License can be found in /usr/share/common-licenses/GPL.
April 2008 RE-PCR(1)