Sponsored Content
Top Forums Shell Programming and Scripting Make Separated files from a single matrix - Perl Post 302818247 by rbatte1 on Friday 7th of June 2013 07:33:11 AM
Old 06-07-2013
A bit clunky, but you could try:-
Code:
#!/bin/ksh

AllCols=`head -1 $InFile|wc -w`                 # Count all the columns to control the loop

CurCol=5                                        # Set first intersting column
while [ $CurCol -le $AllCols ]                  # Start loop 
do
   OutFile=`head -1 $InFile | \
               cut -f$CurCol -d "tab"`.wig      # Get output filename

   cut -f-4,$CurCol -d "tab" $InFile > $OutFile # Generate output file
   ((CurCol=$CurCol+1))                         # Move counter to next column
done


I hope that this helps


Robin
Liverpool/Blackburn
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Separate lines in a single '|' separated line

Hi I have a file with contents like china india france japan italy germany . . . . etc.... I want the output as china|india|france|japan|italy|germany|.|.|. (3 Replies)
Discussion started by: hidnana
3 Replies

2. Shell Programming and Scripting

BASH: print matrix from single array

I am creating a report in groff and need to format data from a file into a table cell. Sample data: dador,173323,bpt,jsp,39030013338878,1 dador,173323,brew,jsp,39030013338860,1 dador,173323,brew,jsp,39030013339447,1 dador,173323,brew,jsp,39030013339538,1 I would like to build a table... (12 Replies)
Discussion started by: Bubnoff
12 Replies

3. UNIX for Dummies Questions & Answers

How to make a distance matrix

Hi, I'm trying to generate a distance matrix between sample pairs for use in a tree-drawing program (example below). The example below demonstrates what I'd like to get out of the data - essentially, to calculate the proportion of positions where two samples differ. Any help much appreciated!... (1 Reply)
Discussion started by: auburn
1 Replies

4. Shell Programming and Scripting

Replace single quote with two single quotes in perl

Hi I want to replace single quote with two single quotes in a perl string. If the string is <It's Simpson's book> It should become <It''s Simpson''s book> (3 Replies)
Discussion started by: DushyantG
3 Replies

5. Homework & Coursework Questions

Find the files and make them comma separated files

Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted! 1. The problem statement, all variables and given/known data: Hi All, I am new to unix, my requirement is like need to find the files like DATA_FUNCTION* and put those... (1 Reply)
Discussion started by: madsongtel
1 Replies

6. UNIX for Dummies Questions & Answers

tab-separated file to matrix conversion

hello all, i have an input file like that A A X0 A B X1 A C X2 ... A Z Xx B A X1 B B X3 .... Z A Xx Z B X4 and i want to have an output like that A B C D A X0 X1 X2 Xy B X1 X3 X4 (4 Replies)
Discussion started by: TheTransporter
4 Replies

7. Shell Programming and Scripting

Shell Code required -Output in Multiple Rows to be in single row separated by Commas -

Hola Greetings Experts , I have records spreaded across multiple lines. in attached log.txt i want output to be in 1 line like this below Atached as Output.txt. In brief Output related to 1 line is spreaded across multiple row I wanted it to be in 1 row . Please opem the file in notepad... (4 Replies)
Discussion started by: manishK
4 Replies

8. Shell Programming and Scripting

Make multiple lines into single quoted comma separated Linux

Hi, I want to change a file file1.txt: 1234 3456 2345 6789 3456 2333 4444 As, file2.txt in Linux: '1234','3456','2345','6789','3456','2333','4444' Could someone please help me. (Single liner sed, awk will be welcome!) (7 Replies)
Discussion started by: wiweq05
7 Replies

9. Shell Programming and Scripting

Insert single quote on every word separated by comma

Hello, I have a text file as:-ABC BCD CDF DEF EFGI need to convert as 'ABC', 'BCD', 'CDF', 'DEF', 'EFG' using a unix command anybody can help me out on this. Regards, Jas Please wrap all code, files, input & output/errors in CODE tags. It makes them easier to read and preserves... (12 Replies)
Discussion started by: jassi10781
12 Replies

10. Shell Programming and Scripting

Tabbed multiple csv files into one single excel file with using shell script not perl

Hi Experts, I am querying backup status results for multiple databases and getting each and every database result in one csv file. so i need to combine all csv files in one excel file with separate tabs. I am not familiar with perl script so i am using shell script. Could anyone please... (4 Replies)
Discussion started by: ramakrk2
4 Replies
bup-margin(1)						      General Commands Manual						     bup-margin(1)

NAME
bup-margin - figure out your deduplication safety margin SYNOPSIS
bup margin [options...] DESCRIPTION
bup margin iterates through all objects in your bup repository, calculating the largest number of prefix bits shared between any two entries. This number, n, identifies the longest subset of SHA-1 you could use and still encounter a collision between your object ids. For example, one system that was tested had a collection of 11 million objects (70 GB), and bup margin returned 45. That means a 46-bit hash would be sufficient to avoid all collisions among that set of objects; each object in that repository could be uniquely identified by its first 46 bits. The number of bits needed seems to increase by about 1 or 2 for every doubling of the number of objects. Since SHA-1 hashes have 160 bits, that leaves 115 bits of margin. Of course, because SHA-1 hashes are essentially random, it's theoretically possible to use many more bits with far fewer objects. If you're paranoid about the possibility of SHA-1 collisions, you can monitor your repository by running bup margin occasionally to see if you're getting dangerously close to 160 bits. OPTIONS
--predict Guess the offset into each index file where a particular object will appear, and report the maximum deviation of the correct answer from the guess. This is potentially useful for tuning an interpolation search algorithm. --ignore-midx don't use .midx files, use only .idx files. This is only really useful when used with --predict. EXAMPLE
$ bup margin Reading indexes: 100.00% (1612581/1612581), done. 40 40 matching prefix bits 1.94 bits per doubling 120 bits (61.86 doublings) remaining 4.19338e+18 times larger is possible Everyone on earth could have 625878182 data sets like yours, all in one repository, and we would expect 1 object collision. $ bup margin --predict PackIdxList: using 1 index. Reading indexes: 100.00% (1612581/1612581), done. 915 of 1612581 (0.057%) SEE ALSO
bup-midx(1), bup-save(1) BUP
Part of the bup(1) suite. AUTHORS
Avery Pennarun <apenwarr@gmail.com>. Bup unknown- bup-margin(1)
All times are GMT -4. The time now is 03:08 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy