Autodeploy script Post: 302791649

5 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

create a shell script that calls another script and and an awk script

Hi guys I have a shell script that executes sql statemets and sends the output to a file.the script takes in parameters executes sql and sends the result to an output file. #!/bin/sh echo " $2 $3 $4 $5 $6 $7 isql -w400 -U$2 -S$5 -P$3 << xxx use $4 go print"**Changes to the table...

2. Shell Programming and Scripting

Script will keep checking running status of another script and also restart called script at night

I am using blow script :-- #!/bin/bash FIND=$(ps -elf | grep "snmp_trap.sh" | grep -v grep) #check snmp_trap.sh is running or not if then # echo "process found" exit 0; else echo "process not found" exec /home/Ketan_r /snmp_trap.sh 2>&1 & disown -h ...

3. UNIX for Dummies Questions & Answers

Calling a script from master script to get value from called script

I am trying to call a script(callingscript.sh) from a master script(masterscript.sh) to get string type value from calling script to master script. I have used scripts mentioned below. #masterscript.sh ./callingscript.sh echo $fileExist #callingscript.sh echo "The script is called"...

4. Shell Programming and Scripting

Shell script works fine as a standalone script but not as part of a bigger script

Hello all, I am facing a weird issue while executing a code below - #!/bin/bash cd /wload/baot/home/baotasa0/sandboxes_finance/ext_ukba_bde/pset sh UKBA_publish.sh UKBA 28082015 3 if then echo "Param file conversion for all the areas are completed, please check in your home directory"...

5. Shell Programming and Scripting

How to block first bash script until second bash script script launches web server/site?

I'm new to utilities like socat and netcat and I'm not clear if they will do what I need. I have a "compileDeployStartWebServer.sh" script and a "StartBrowser.sh" script that are started by emacs/elisp at the same time in two different processes. I'm using Cygwin bash on Windows 10. My...

LEARN ABOUT DEBIAN

cd-hit-para

CD-HIT-PARA.PL(1)						   User Commands						 CD-HIT-PARA.PL(1)

NAME

       cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs

SYNOPSIS

       cd-hit-para.pl options

DESCRIPTION

	      This  script  divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel.  After
	      all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.

	      You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).

   Requirements:
	      1 When run this script over a network, the directory where you

	      run the scripts and the input files must be available on all the remote hosts with identical path.

	      2 If you choose "ssh" to submit jobs, you have to have

	      passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.

	      3 I suggest to use queuing system instead of ssh,

	      I currently support PBS and SGE

	      4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d

	      cd-hit-div cd-hit-div.pl must be in same directory where this script is in.

       Options

       -i input filename in fasta format, required

       -o output filename, required

       --P program, "cd-hit" or "cd-hit-est", default "cd-hit"

       --B filename of list of hosts,

	      requred unless -Q or -L option is supplied

       --L number of cpus on local computer, default 0

	      when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
	      just use "--L 1" unless you have enough RAM for each cpu

       --S Number of segments to split input DB into, default 64

       --Q number of jobs to submit to queue queuing system, default 0

	      by default, the program use ssh mode to submit remote jobs

       --T type of queuing system, "PBS", "SGE" are supported, default PBS

       --R restart file, used after a crash of run

       -h print this help

       More cd-hit/cd-hit-est options can be speicified in command line

	      Questions, bugs, contact Weizhong Li at liwz@sdsc.edu

cd-hit-para.pl 4.6-2012-04-25					    April 2012							 CD-HIT-PARA.PL(1)